| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5446067 | 45 (1.030) | 3 (0.070) | 3/328 | NT | 6.6% | coding (212/624 nt) | thiE | Thiamine‑phosphate synthase |
| ? | AE015451 | = 5446087 | 42 (1.000) | coding (232/624 nt) | thiE | Thiamine‑phosphate synthase | |||||
GAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5446006‑5446067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccgaCACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGCCGCCTCGACATGGGACAGGAAACGGCCGGCGAGCAGCTGGCTGTCGGTGATGGCGTACAGACCGCGTAGCTTCATT < AE015451/5446087‑5445855 GAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGC > 1:753390/1‑219GAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGC < 2:753388/219‑1 TGATCAACGATGACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGCCGCGTCGACATGc > 2:483430/1‑188 acCGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGCCGCCTCGACATGGGACAGGAAACGGCCGGCGAGCAGCTGGCTGTCGGT < 2:691760/211‑1 CGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTC < 2:400086/118‑1 CGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGCCGCCTCGACATGGGACAGGAAACGGCCGGCGAGCAGCTGGCTGTCGGTGATGGCGTACAGACCGCGTAGCTTCATT > 1:230772/1‑236 GAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5446006‑5446067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccgaCACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTTCCAGGGCCGCCTCGACATGGGACAGGAAACGGCCGGCGAGCAGCTGGCTGTCGGTGATGGCGTACAGACCGCGTAGCTTCATT < AE015451/5446087‑5445855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |