New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5866389 =	34 (0.780)	5 (0.120)	5/320	NT	15.0%	coding (156/444 nt)	PP_5140	Transcriptional regulator, MerR family
	?	AE015451	5866470 =	25 (0.610)					coding (237/444 nt)	PP_5140	Transcriptional regulator, MerR family

CGTTGCAGCGCCGCCGCAGCTCCACCAGCTGCTCCTGCAATGCCACCAAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5866573‑5866389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgcggcagCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTG  >  AE015451/5866470‑5866676                                                                                                                                                                                                                                                                                                                                                                                                          CGTTGCAGCGCCGCCGCAGCTCCACCAGCTGCTCCTGCAATGCCACCAAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCA                                                                                                                                                                                                                  >  2:707591/1‑184      CAGCGCCGCCGCAGCTCCACCAGCTCCTCCTGCAATGCCACCAAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAGCGTCAAT                                                                                                                                                                                                          <  2:649094/187‑1                                    TGCAATGCCACCAAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAG                                                                                                                                                                         >  1:649806/1‑190                                                AAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGCCATGTCCAGCGTGCGGCAGC                                                                                                                                                                                                                >  2:122492/1‑139                                                        GATCCGCGCCTGAACATGCTCGATATGCCCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCG                                                                                                                                                                                                                         <  2:239319/122‑1                                                            CGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATAT                                                                                                                                                                                      <  2:649804/153‑1                                                                                      GTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGCGGCTGTCGCGCAGGCGTAGCAGGCTGCGCATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAGCGGCAATGCGCTGATCGACGAGCATATCG                                                                                                                                                                                    <  2:724102/129‑1                                                                                                                       GTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAG                                                                                               <  2:12744/181‑1                                                                                                                                                                                       CAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGGGTCACGGGCATTG  >  1:670208/1‑210                                                                                                                                                                                                                                                                                                                                                                                                          CGTTGCAGCGCCGCCGCAGCTCCACCAGCTGCTCCTGCAATGCCACCAAGCCATCGATCCGCGCCTGAACATGCTCGATATGCTCGTCGATCAGCGCATTGACGCTGCCGCACGCGTCGTCGGGGCTGTCGCGCAGGCGTAGCAGGCTGCGAATTTCGTCCAGGGTCATGTCCAGCGTGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5866573‑5866389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgcggcagCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCACGGGCATTG  >  AE015451/5866470‑5866676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.