New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5866389 =	34 (0.780)	5 (0.120)	5/320	NT	15.0%	coding (156/444 nt)	PP_5140	Transcriptional regulator, MerR family
	?	AE015451	5866470 =	25 (0.610)					coding (237/444 nt)	PP_5140	Transcriptional regulator, MerR family

TGAGCCTGTTGCCAAGTGAACACCCTGTAGCCACTATAGGGTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGC  >  AE015451/5866167‑5866600                                                                                                                                                                                                                               |                                                                                                                                                                                                                    tGAGCCTGTTGCCAAGTGAACACCCTGTAGCCACTATAGGGTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTgg                                                                                                                                                                                                        <  1:610735/236‑1 (MQ=255)           gCCAAGTGAACCCCCTGTAGCCACTATAGGGTCAAGCCACTTGCTGGAGATTGCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCAc                                                                                                                                                                                                             <  1:119240/221‑1 (MQ=255)                caatgcccgtgaccccgccccacatgggaatgttcggtatccggtaccgataccgccccgtttgtctccagttgctgcaagatcgcgcattcactcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTg                                                                                                                                                                                                                   >  1:670208‑M1/208‑210 (MQ=255)                         cTGTAGCCACTATAGGGTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGAcc                                                                                                                                                                                                     >  2:649040/1‑214 (MQ=255)                                     taGGGTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGc                                                                                                                                                                     >  1:693888/1‑235 (MQ=255)                                       gggTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCt                                                                                                                                                                   >  2:754577/1‑235 (MQ=255)                                            aaGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTgcgcca                                                                                                                                                             >  1:291300/1‑234 (MQ=255)                                             aGCCACTTGCTGGAGATTTCGTGAGGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCAc                                                                                                                                                                                                             <  2:173321/187‑1 (MQ=255)                                                cACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCa                                                                                                                                                                                >  1:185692/1‑213 (MQ=255)                                                cACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCa                                                                                                                                                                                <  2:185690/213‑1 (MQ=255)                                                cACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGc                                                                                                                                                         >  1:40648/1‑236 (MQ=255)                                                cACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATGCGCAGCCTGCTACGCCTGCGCGACAGc                                                                                                                                                         >  1:24200/1‑236 (MQ=255)                                                                                         aaaGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCcg                                                                                                                                                     <  2:774058/199‑1 (MQ=255)                                                                                                   aCTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCcgacg                                                                                                                                                  >  1:445724/1‑192 (MQ=255)                                                                                                   aCTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTCCTGCCGCGCCAATgcgcc                                                                                                                         >  2:617620/1‑216 (MQ=255)                                                                                                       cgcgGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCgg                                                                                                                                        <  2:594768/198‑1 (MQ=255)                                                                                                        gcgGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCTGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGt                                                                                                 >  1:728389/1‑236 (MQ=255)                                                                                                        gcgGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCgacgac                                                                                                                                                >  2:618372/1‑189 (MQ=255)                                                                                                          ggTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGCCAGCCCcgac                                                                                                                                                   >  1:172405/1‑184 (MQ=255)                                                                                                          ggTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGCAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCgc                                                                                                                                  >  1:255569/1‑200 (MQ=255)                                                                                                             ctcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCcgac                                                                                                                                                   <  2:12744‑M1/67‑1 (MQ=255)                                                                                                                         ctactaCGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAg                                                                                                                                     >  2:754540/1‑183 (MQ=255)                                                                                                                             tacGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGc                                                                                                                                          <  2:483481/174‑1 (MQ=255)                                                                                                                             tacGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGc                                                                                                                                          >  1:483483/1‑174 (MQ=255)                                                                                                                                gAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGCTGTACACCCAGGCCCATGTGGAGCGGCTGCCCTTCATCCGCAACTGc                                                                                                                                                                                                                  >  2:209479/1‑99 (MQ=255)                                                                                                                                            ctgctgCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCTGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGc                                                                 <  2:728387/232‑1 (MQ=255)                                                                                                                                               ctgcCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGa                                                             <  2:693886/233‑1 (MQ=255)                                                                                                                                                 gcCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGc                                                                 >  2:339565/1‑227 (MQ=255)                                                                                                                                                                    gAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATcgacg                                                                                                                 >  2:729288/1‑160 (MQ=255)                                                                                                                                                                       ggCAACTACCGGTTGTACACCCAGGCCCTTGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATc                                                                                    <  2:156260/186‑1 (MQ=255)                                                                                                                                                                        gCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTg                                  >  1:325131/1‑235 (MQ=255)                                                                                                                                                                                       ctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCa                                                                >  1:649806‑M1/41‑190 (MQ=255)                                                                                                                                                                                                cccATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGt                                                                                                                                            >  1:179530/1‑105 (MQ=255)                                                                                                                                                                                                cccATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAg                                                >  2:541215/1‑197 (MQ=255)                                                                                                                                                                                                  cgatatgctcgtcgatcagcgcattgccgCTGCCGCACGCTGGACATGACCCTGGACGAAATGCGCAGCCTGCTACGCCTGCGCGACAGCCGCGACGACGCGTGCGGCAGCGTCAATGCGCTGATcgac                                                                                                                  <  2:724102‑M1/100‑1 (MQ=255)                                                                                                                                                                                                    atatgctcgtcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGcgcg                                                                                        <  2:649804‑M1/126‑1 (MQ=255)                                                                                                                                                                                                      tgGAGCGGCTGACCTTCATCCGCAACTACCGCAAGCTGGACATAACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGTCGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGTATGTTCAGGCGCGGATCGATGGCATGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAAcg                             >  2:496215/1‑210 (MQ=255)                                                                                                                                                                                                       ggAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTg   >  1:459992/1‑235 (MQ=255)                                                                                                                                                                                                        gAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTgc  >  1:602524/1‑235 (MQ=255)                                                                                                                                                                                                                gACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCAtt                                                                   >  1:401628/1‑162 (MQ=255)                                                                                                                                                                                                                        attgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGGAGCTGGTGGAGCTGCGGCGGCGCTg                                  <  2:649094‑M1/180‑1 (MQ=255)                                                                                                                                                                                                                              gCTGCCGCACGCTGGACATGGCCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCtt                                                                            >  2:122492‑M1/2‑139 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                    TGAGCCTGTTGCCAAGTGAACACCCTGTAGCCACTATAGGGTCAAGCCACTTGCTGGAGATTTCGTGATGAAGATCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTGCAGGAGCAGCTGGTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGC  >  AE015451/5866167‑5866600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.