New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6088154	53 (1.210)	3 (0.070)	3/330	NT	6.2%	coding (376/1044 nt)	aphA	Acetylpolyamine aminohydrolase
	?	AE015451	= 6088242	39 (0.930)					coding (464/1044 nt)	aphA	Acetylpolyamine aminohydrolase

CATCCAGGGCCCGACCGACTTCGGCCGTGCGCCGTTGTTGCGCGTCCACAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6087919‑6088154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTTGCGCAGCACTGTAGGCCGCCTGCCAGGTACCCGCGGTGATGGGGGCGCCGGCATCGAAACTGTAGTAACCCAGTTCGCCATGCAGGCCGGTCGGCTTGACCTGGCGCAGTGTGCGGGCCGGCCAGGTGAAGGGCAGCAGGT  <  AE015451/6088242‑6088035                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATCCAGGGCCCGACCGACTTCGGCCGTGCGCCGTTGTTGCGCGTCCACAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGG                                                                                                                                                                                                                   <  1:771751/235‑1                                                ACAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGTCCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  >  1:468949/1‑189                                                ACAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGTCCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  <  2:468947/189‑1                                                 CAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCC                                                                                                                                                                  <  1:330773/236‑1                                                     GCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGCGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGG                                                                                                                                                              <  1:406502/236‑1                                                                                                                                        GCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGGTGCCGGCGCCCCCATCACCGCGGGTACCTGGCGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTTGCGCAGCACTGTAGGCCGCCTG                                                                                                                         <  2:508474/190‑1                                                                                                                                                                   GCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  <  1:135871/74‑1                                                                                                                                                                   GCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  >  2:135869/1‑74                                                                                                                                                                                        ACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  <  1:109589/53‑1                                                                                                                                                                                        ACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC                                                                                                                                                                                                                  >  2:109588/1‑53                                                                                                                                                                                                                                         TGGCGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTTGCGCAGCACTGTAGGCCGCCTGCCAGGTACCCGCGGTGATGGGGGCGCCGGCATCGACACTGTAGTAACCCAGTTCGCCATGCAGGCCGGTCGGCTTGACCGGGCGCAGTGT                               >  2:87910/1‑183                                                                                                                                                                                                                                           GCGGGCGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTTGCGCAGCACTGTAGGCCGCCTGCCAGGTACCCGCGGTGATGGGGGCGCCGGCATCGAAACTGTAGTAACCCAGTTCGCCATGCAGGCCGGTCGGCTTGACCTGGCGCAGTGTGCGGGCCGGCCAGGTGAAGGGCAGCAGGT  <  1:201617/210‑1                                                                                                                                                                                                                                           GCGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTT                                                                                                                                               <  2:369617/69‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATCCAGGGCCCGACCGACTTCGGCCGTGCGCCGTTGTTGCGCGTCCACAGCGCCGATTACCTGGATTTCTTCGAAGGCGCCTGGGCCCGCTGGGCTGCGCTGGGCCAAGAGGGTGACCTGCTGCCCTTCACCTGGCCGGCCCGCACACTGCGCCAGGTCAAGCCGACCGGCCTGCATGGCGAACTGGGTTACTACAGTTTCGATGCCGGCGCCCCCATCACCGCGGGTACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6087919‑6088154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcGGACGGCACAGGGCGAACGCGGCATGGGCGCCTTGCTGAATTGCAGCCTGGGCGGTCAGGGCAACTTGCGCAGCACTGTAGGCCGCCTGCCAGGTACCCGCGGTGATGGGGGCGCCGGCATCGAAACTGTAGTAACCCAGTTCGCCATGCAGGCCGGTCGGCTTGACCTGGCGCAGTGTGCGGGCCGGCCAGGTGAAGGGCAGCAGGT  <  AE015451/6088242‑6088035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.