New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	160025 =	21 (0.480)	3 (0.070)	3/326	NT	12.8%	coding (364/1956 nt)	PP_0149	conserved exported protein of unknown function
	?	AE015451	160058 =	21 (0.500)					coding (331/1956 nt)	PP_0149	conserved exported protein of unknown function

TGGCCATTGTGCTGTTCGCGCTCGCCTCGTCGGCCCACGTACTGCTGCCACCCGGCCAGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCATGTTGTCGCTCCAGCTGACCCGCACGCGGCGGTCCAGCTGTTGCTTGAAGCGCGGTGGCAGCTTGCCCA  >  AE015451/159790‑160243                                                                                                                                                                                                                                            |                                                                                                                                                                                                                           ctcgacccacaacaaactaaagcctcccaagccctgctcgacgaggccatgggcaagctgccaccgcgcttcaagcaacagctggaccgccgcgtgcgggtcagctggagcgacaacatgcctgccgacgcctatgggcaggcatcactgctatccaccctcgagctcaaccgccgcttgctgcccagcctcgccgatggcagcgccgccgctaagcgcaccgaccgcccacatgg                                                                                                                                                                                                                            >  1:328065‑M1/236‑236 (MQ=255)               ttCGCGCTCGCCTCGTCGGCCCACGTACTGCTGCCACCCGGCCAGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCcagc                                                                                                                                                                                                               <  1:672135/235‑1 (MQ=255)                                     aCGTACTGCTGCCACCCGGCCAGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCAt                                                                                                                                                                                         >  1:637806/1‑235 (MQ=255)                                        gacgaggccatgggcaagctgccaccgcgcttcaagcaacagctggaccgccgcgtgcgggtcagctggagcgacaacatgcctgccgacgcctatgggcaggcatcactgctatccaccctcgagctcaaccgccgcttgctgcccagcctcgccgatggcagcgccgccgctaagcgcaccgaccgcccacatgGCa                                                                                                                                                                                                                          <  2:316885‑M1/3‑1 (MQ=255)                                              ggccgccCGGCCGGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCAc                                                                                                                                                                                                     <  2:230583/213‑1 (MQ=255)                                                  aCCCGGCCCGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCAtgtg                                                                                                                                                                                      <  1:172455/225‑1 (MQ=255)                                                                            tcgtcgCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGcgg                                                                                                                                                                                 <  1:166992/204‑1 (MQ=255)                                                                                                gcgcTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCca                                                                                                                                                                                                                 <  1:700675/152‑1 (MQ=255)                                                                                                              ggcgGCATTCTGCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGGGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCca                                                                                                                                                                                                                 <  2:217276/137‑1 (MQ=255)                                                                                                                  gCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGt                                                                                                             <  2:500727/234‑1 (MQ=255)                                                                                                                                                   cctgctacccccccccgagctcacccgccgcttgctgcccagcctcgccgatggcagcgccgccgctaagcgcaccgaccgcccacatgg                                                                                                                                                                                                                            >  1:126697‑M1/90‑90 (MQ=255)                                                                                                                                                       tGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCAt                                                                      >  1:529712/1‑236 (MQ=255)                                                                                                                                                                  gCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGGTGAGCTCGAGGGCGGATAGc                                                                                                      >  2:716345/1‑193 (MQ=255)                                                                                                                                                                          gccgcagcttgctgcccagcctcgccgatggcagcgccgccgctaagcgcaccgaccgcccacatgGCACGGTGGCCAGCAGCTCTTCa                                                                                                                                                                                                      >  1:177466‑M1/67‑89 (MQ=255)                                                                                                                                                                                      aaggcacgcTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGcggcggg                                                                                                                          >  2:598938/7‑152 (MQ=255)                                                                                                                                                                                       ttCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCg                                                                                                                  <  1:730863/160‑1 (MQ=255)                                                                                                                                                                                           gcgcTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCATGTTGTCGCTCCAGCTGAccc                                                  <  1:583901/220‑1 (MQ=255)                                                                                                                                                                                              cTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATc                                                                                                                                                    >  1:493376/1‑119 (MQ=255)                                                                                                                                                                                              cTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGAtgcctgc                                                                                          <  1:2125/177‑1 (MQ=255)                                                                                                                                                                                                     acaGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCATGTTGTCGCTCCAGCTGACCCGCACGCGGCGGTCCa                                   <  1:80429/225‑1 (MQ=255)                                                                                                                                                                                                              ccgccgctaagcgcaccgaccgcccacatgGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGa                                                                                                                       >  1:534675‑M1/31‑132 (MQ=255)                                                                                                                                                                                                              ccgccgctaagcgcaccgaccgcccacatgGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGa                                                                                                                       <  2:534673‑M1/102‑1 (MQ=255)                                                                                                                                                                                                               aCGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCAGGGCAGCAAGCGGCGGTTGAGCTCGGGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGGAGGCCtgtttt                                                                 >  2:763566/1‑183 (MQ=255)                                                                                                                                                                                                                        gagaTGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGATCTTCACGCACCGTGCCACGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCCGCCATCGGCGAGGCGGGGCAGCAGGCGGCGGGTGa                                                                                                                       >  2:465854/1‑122 (MQ=255)                                                                                                                                                                                                                            tGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCATGTTGTCGCTCCAGCTGACCCGCACGCGGCGGTCCAGCTGTTGCTTGAAGCGCGGTGGCAGCTTGCCCa  <  1:487591/235‑1 (MQ=255)                                                                                                                                                                                                                              ggTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGGTGAGcg                                                                                                                    >  1:240771/1‑118 (MQ=255)                                                                                                                                                                                                                                     tCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAgggcgg                                                                                                                                         >  2:197131/1‑87 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                           TGGCCATTGTGCTGTTCGCGCTCGCCTCGTCGGCCCACGTACTGCTGCCACCCGGCCAGGTCGAGCAGGCGTGGGTCGTCGCTCAGGGTGAAGCGGCGCTCGGCCTGCCCGCGGCATTCTTCCGGCAGGCCGACCTTGCCCAGCGTGCCTTGCTGGCGTTTGCAGCGTGCAATCAGCGCATTTTCGGCGCTGGGCCACAGGCGGGCACGGTCGTAGAGATGGGTGAGCTCGTGCAGCACGGTGGCCAGCAGCTCTTCACGCACCGTGCCATGTGGGCGGTCGGTGCGCTTAGCGGCGGCGCTGCCATCGGCGAGGCTGGGCAGCAAGCGGCGGTTGAGCTCGAGGGTGGATAGCAGTGATGCCTGCCCATAGGCGTCGGCAGGCATGTTGTCGCTCCAGCTGACCCGCACGCGGCGGTCCAGCTGTTGCTTGAAGCGCGGTGGCAGCTTGCCCA  >  AE015451/159790‑160243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.