New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3409928 =	56 (1.280)	3 (0.070)	3/332	NT	5.3%	intergenic (‑494/‑42)	PP_3022/PP_3024	Transcriptional regulator, AraC family/conserved protein of unknown function
	?	AE015451	= 3450711	52 (1.230)					intergenic (‑125/+258)	PP_5558/PP_3069	putative transcriptional xre family of phage origin/Outer membrane autotransporter

ATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCGAAA  >  AE015451/3409703‑3410158                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                       aTCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCg                                                                                                                                                                                                                               <  1:735235/235‑1 (MQ=255)          ttCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAata                                                                                                                                                                                                                     <  1:316383/236‑1 (MQ=255)             tGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGAc                                                                                                                                                                                                                             <  2:455691/225‑1 (MQ=255)             tGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCAAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGAc                                                                                                                                                                                                                             >  1:455693/1‑225 (MQ=255)               cGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGCCAATATaa                                                                                                                                                                                                                  >  1:611057/1‑234 (MQ=255)                  cATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATaaa                                                                                                                                                                                                                 <  2:294362/232‑1 (MQ=255)                                       gggCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTa                                                                                                                                                                                         <  1:694495/235‑1 (MQ=255)                                           ttGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGa                                                                                                                                                                                                                              <  1:46438/193‑1 (MQ=255)                                                     tgtTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGa                                                                                                                                                                                                                              >  2:643549/1‑184 (MQ=255)                                                             aCCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTaa                                                                                                                                                                                                <  2:445366/206‑1 (MQ=255)                                                             aCCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTaa                                                                                                                                                                                                >  1:445368/1‑206 (MQ=255)                                                                  cGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTcagc                                                                                                                                                                <  2:479383/233‑1 (MQ=255)                                                                   gAATACCTATTCCTGGCCCTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGt                                                                                                                                                                                                  <  2:490813/198‑1 (MQ=255)                                                                    aaTACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACt                                                                                                                                                                                                                            >  1:242919/1‑171 (MQ=255)                                                                    aaTACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACt                                                                                                                                                                                                                            <  2:242917/171‑1 (MQ=255)                                                                      tACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCa                                                                                                                                                                              <  1:47283/215‑1 (MQ=255)                                                                       aCCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAgag                                                                                                                                                                                                                               >  2:363131/1‑163 (MQ=255)                                                                              ccTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCa                                                                                                                                                 >  1:514028/1‑236 (MQ=255)                                                                                   ccATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTg                                                                                                                                            <  1:409288/236‑1 (MQ=255)                                                                                    cATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATaa                                                                                                                                                                                                                  >  2:420207/1‑165 (MQ=255)                                                                                     aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACt                                                                                                                                                                                                                            <  1:475362/154‑1 (MQ=255)                                                                                     aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACt                                                                                                                                                                                                                            >  2:475360/1‑154 (MQ=255)                                                                                     aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTg                                                                                                                                            >  1:678020/1‑234 (MQ=255)                                                                                     aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACACTCCATGCATTg                                                                                                                                                                       >  2:134232/1‑207 (MQ=255)                                                                                     aTCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGGTCTGGGTGGCGGCCGGCAACCCt                                                                                                                                                                                                                                   >  2:328772/1‑147 (MQ=255)                                                                                                      ggCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTa                                                                                                                                                                                                 >  1:169597/1‑164 (MQ=255)                                                                                                        ccTACCTGTTCTACATCGCCTGGCAACAGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACaa                                                                                                                       >  1:422942/1‑236 (MQ=255)                                                                                                             cTGTTCTACCTCGCCTGGCAACTGTGGCGCGGACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACt                                                                                                                                                                    <  1:276367/186‑1 (MQ=255)                                                                                                               gTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGAGAACAGAGGc                                                                                                                                                  >  2:143929/1‑202 (MQ=255)                                                                                                                  ctgcATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGAc                                                                                                                                                                                                                             <  2:240094/121‑1 (MQ=255)                                                                                                                  cTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCaaa                                                                                                                                               <  2:641408/202‑1 (MQ=255)                                                                                                                   tACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTgcgt                                                                                                            >  2:554981/1‑235 (MQ=255)                                                                                                                        cGCCTGGCAACTGTGGCGCGCCCCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGt                                                                                                                                                                                                  <  2:196037/145‑1 (MQ=255)                                                                                                                        atgaacagtatagcgagaaagccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAAc                                                                                                                                                                                                                                      <  2:216631‑M1/3‑1 (MQ=255)                                                                                                                        atgaacagtatagcgagaaagccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAAc                                                                                                                                                                                                                                      >  1:216633‑M1/107‑109 (MQ=255)                                                                                                                           cTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATg                                                                                                    <  1:775746/236‑1 (MQ=255)                                                                                                                             ggCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGa                                                                                                  >  1:106122/1‑236 (MQ=255)                                                                                                                               cagcTGTGGCGCGCACCCGTGACCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCTGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCa                                                                                                                                                                              <  2:763363/155‑1 (MQ=255)                                                                                                                                        cgcgcACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCAtt                                                                                                         <  2:497612/218‑1 (MQ=255)                                                                                                                                           gcACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCt                                                                                    >  1:567424/1‑236 (MQ=255)                                                                                                                                           agccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTgg                                                                                                                                                                                           >  1:512423‑M1/88‑133 (MQ=255)                                                                                                                                           agccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTgg                                                                                                                                                                                           <  2:512421‑M1/46‑1 (MQ=255)                                                                                                                                             ccatcttaagcaatgtatacggatcaaggcctgcttaggggcaggagggtggttattctaaaaattatattatcagtcgctaggtAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGa                                                                                        <  1:610990‑M1/145‑1 (MQ=255)                                                                                                                                                     gCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGATTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTaaaaaa                                                                           >  1:783579/1‑235 (MQ=255)                                                                                                                                                       gagaCCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATgg                                                                                                   >  2:395785/1‑209 (MQ=255)                                                                                                                                                            cGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAg                                                                                                                                                                                                           >  1:477292/1‑100 (MQ=255)                                                                                                                                                            cGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAg                                                                                                                                                                                                           <  2:477290/100‑1 (MQ=255)                                                                                                                                                                         gATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATaa                                                      <  1:372465/236‑1 (MQ=255)                                                                                                                                                                                cAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCAc                                                                                                                  >  1:720651/1‑169 (MQ=255)                                                                                                                                                                                cAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATaa                                                      <  2:106121/229‑1 (MQ=255)                                                                                                                                                                                    cggcACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTg                                              <  2:514026/233‑1 (MQ=255)                                                                                                                                                                                      gcACCTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCaaaa                                         <  1:773295/236‑1 (MQ=255)                                                                                                                                                                                        aCTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACa                                       <  1:554983/236‑1 (MQ=255)                                                                                                                                                                                          ttGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCAtt                                                                                                         >  2:789595/1‑168 (MQ=255)                                                                                                                                                                                          ttGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCAtt                                                                                                         <  1:789597/168‑1 (MQ=255)                                                                                                                                                                                            ggCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAg                                                     >  2:505825/1‑218 (MQ=255)                                                                                                                                                                                               gcCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACt                                                                                                                                                                    <  1:251523/104‑1 (MQ=255)                                                                                                                                                                                                ccTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTGCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCgg                                                           <  1:46597/208‑1 (MQ=255)                                                                                                                                                                                                     cgcgcCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATc                                                                                                                                                                                       <  2:23620/79‑1 (MQ=255)                                                                                                                                                                                                      gcgcCAGGAGTTCTGGGTGGCGGCCGCCAACCCTAGCGa                                                                                                                                                                                                                              >  2:156927/1‑39 (MQ=255)                                                                                                                                                                                                                            gccggcAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCgtg             <  1:574486/226‑1 (MQ=255)                                                                                                                                                                                                                             ccggcAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCGaaa  >  2:167338/1‑236 (MQ=255)                                                                                                                                                                                                                              cggcAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCGaa   <  2:345162/234‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                       ATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGGCACTTGGCGCCTGGCGCGCCAGGAGTTCTGGGTGGCGGCCGGCAACCCTAGCGACTGACAATATAAACTCTAGCTTCAGGGTAAATTGGTATCAACCCTCCATGCATTGACTCAGCAGGCGAACAGAGGCAAATTGCCACGCTTGTCGTACTTACAAATCACCTGCGCATTGAATGGATATCATGTGAAGCTTTTAAAAAAAGACTACTACCTTCGGCATAAGCGCATTGCAAAACAGCGGACTTGGCAAAAGCATGGGCGTGTGAGACCGAAA  >  AE015451/3409703‑3410158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.