New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5138413	30 (0.690)	3 (0.070)	3/322	NT	10.5%	coding (600/963 nt)	PP_4523	putative Agmatinase
	?	AE015451	= 5138512	23 (0.560)					coding (699/963 nt)	PP_4523	putative Agmatinase

CCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTG  >  AE015451/5138187‑5138640                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                    cccTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCaa                                                                                                                                                                                                                             <  1:775235/235‑1 (MQ=255)       ggggCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGc                                                                                                                                                                                                                      >  1:311438/1‑236 (MQ=255)                      tCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTc                                                                                                                                                                                                       <  1:401712/236‑1 (MQ=255)                          ccTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTcc                                                                                                                                                                                                      <  2:707483/233‑1 (MQ=255)                                     tgcgtgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGcc                                                                                                                                                                                                               >  1:18714/1‑213 (MQ=255)                                           cgcTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCATGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAagag                                                                                                                                                                                  <  1:499547/236‑1 (MQ=255)                                                cacaAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTg                                                                                                                                                                             <  1:70031/236‑1 (MQ=255)                                                           cGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGCTCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCg                                                                                                                                                                                                                    >  2:398794/1‑186 (MQ=255)                                                             gCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTc                                                                                                                                                                                                                  >  2:530861/1‑186 (MQ=255)                                                             gCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTg                                                                                                                                                                <  1:714517/236‑1 (MQ=255)                                                               aaGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGa                                                                                                                                                              >  1:788393/1‑236 (MQ=255)                                                                aGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGa                                                                                                                                                              >  1:509790/1‑235 (MQ=255)                                                                              cacaTCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGa                                                                                                                                               >  1:373384/1‑236 (MQ=255)                                                                                   cGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCAATGGa                                                                                                                                                              >  2:523531/1‑216 (MQ=255)                                                                                    gATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGt                                                                                                                                            >  2:584569/1‑233 (MQ=255)                                                                                        cccACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAgg                                                                                                                                                                                          <  2:406388/183‑1 (MQ=255)                                                                                        cccACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCTACTGATGGcc                                                                                                                                                 >  1:160071/1‑224 (MQ=255)                                                                                                        cGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCg                                                                                                                                                                                       <  2:13952/170‑1 (MQ=255)                                                                                                              caTGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                               <  1:584571/236‑1 (MQ=255)                                                                                                               aTGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGaaaa                                                                                                                                   <  2:294210/215‑1 (MQ=255)                                                                                                                   tCGGCGAGAAGATCGCCAACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACGCCGCCGGCGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGc                                                                                                                                                                           <  2:323065/171‑1 (MQ=255)                                                                                                                               tCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACcttttcccgcacttcggccatcagtggctccagtg                                                                                                                                                                                                  <  2:461417‑M1/136‑36 (MQ=255)                                                                                                                                cGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCaa                                                                                                                                                                                                                             >  2:348619/1‑108 (MQ=255)                                                                                                                                   ccACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATg                                                                                          <  1:288774/236‑1 (MQ=255)                                                                                                                                                ttCCGCCGCGCCGTGGAAGACGACCTGCTCGACTGCGACCGCGTAGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGtt                                                                                                                <  2:415304/201‑1 (MQ=255)                                                                                                                                                                                     aCCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATcggcgg                                         <  1:306524/235‑1 (MQ=255)                                                                                                                                                                                                cAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACcttttcgcgcacttcggccatcagtggcgccagtgacttgtgccagcactcttcggcctggaccacgcg                                                                                                                                                                >  2:407665‑M1/1‑36 (MQ=255)                                                                                                                                                                                                     cGGCCTGCGCGCCCAGGGCCACACCGCCGACGACTTCAACTGGAGCCGCCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGa                                    <  1:244653/224‑1 (MQ=255)                                                                                                                                                                                                           gcgcgcCCCGGGCTACACCGCCGACcttttcccgcacttcggccatcagtggccccagtgacttgtgccagcactcttccgcccggaccacgcggaagccctggcggcggccccaggtgaagtcgtcggcgg                                                                                                                          >  1:177518‑M1/1‑25 (MQ=255)                                                                                                                                                                                                               gcCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCa                                                                                                                                                                                                              >  2:87438/1‑44 (MQ=255)                                                                                                                                                                                                               gcCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATc                                              <  1:284221/204‑1 (MQ=255)                                                                                                                                                                                                                cccAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGAt              >  1:472476/1‑235 (MQ=255)                                                                                                                                                                                                                            ccgccgACGACTTCACCTGGGGCCGCCGCCAGGGCTTCCGCGTGGTCCGGGCGGAAGAGTGCTGGCACAAGTCACTGGGGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagcccggggcgcgc                                                                                                         >  1:177518‑M2/1‑107 (MQ=255)                                                                                                                                                                                                                             cgccgACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTg  <  2:509788/234‑1 (MQ=255)                                                                                                                                                                                                                                  acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGgcg                                                                      <  1:548197/161‑1 (MQ=255)                                                                                                                                                                                                                                  acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGgcg                                                                      >  2:548195/1‑161 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                    CCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTG  >  AE015451/5138187‑5138640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.