New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5138413	30 (0.690)	3 (0.070)	3/322	NT	10.5%	coding (600/963 nt)	PP_4523	putative Agmatinase
	?	AE015451	= 5138512	23 (0.560)					coding (699/963 nt)	PP_4523	putative Agmatinase

CATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAACC  >  AE015451/5138296‑5138729                                                                                                                                                                                                                         |                                                                                                                                                                                                                          caTGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGttt                                                                                                                                                                                                        <  1:584571/236‑1 (MQ=255)                      ccACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATg                                                                                                                                                                                   <  1:288774/236‑1 (MQ=255)                                   ttCCGCCGCGCCGTGGAAGACGACCTGCTCGACTGCGACCGCGTAGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGtt                                                                                                                                                                                                         <  2:415304/201‑1 (MQ=255)                                                                        aCCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATcggcgg                                                                                                                                  <  1:306524/235‑1 (MQ=255)                                                                                        cGGCCTGCGCGCCCAGGGCCACACCGCCGACGACTTCAACTGGAGCCGCCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGa                                                                                                                             <  1:244653/224‑1 (MQ=255)                                                                                                  gcCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATc                                                                                                                                       <  1:284221/204‑1 (MQ=255)                                                                                                   cccAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGAt                                                                                                       >  1:472476/1‑235 (MQ=255)                                                                                                               ccgccgACGACTTCACCTGGGGCCGCCGCCAGGGCTTCCGCGTGGTCCGGGCGGAAGAGTGCTGGCACAAGTCACTGGGGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagcccggggcgcgc                                                                                                                                                                                                  >  1:177518‑M2/1‑107 (MQ=255)                                                                                                                cgccgACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTg                                                                                           <  2:509788/234‑1 (MQ=255)                                                                                                                     acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGgcg                                                                                                                                                               >  2:548195/1‑161 (MQ=255)                                                                                                                     acgacTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGgcg                                                                                                                                                               <  1:548197/161‑1 (MQ=255)                                                                                                                        acTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTg                                                                                           <  2:472474/226‑1 (MQ=255)                                                                                                                                gggAGCCGTCGCCAGGGCTGCCGCGTGGGCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGaaa                                                                                                                                         <  1:221400/171‑1 (MQ=255)                                                                                                                                                     cgcgTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGCGCCACTGATGGCCGAAGTGCGCGAAAAGgtcggcggtgtagccctgggcgcgcaggccgatctg                                                                                                                                                                                       >  2:407665‑M2/1‑69 (MQ=255)                                                                                                                                                       cgTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCTACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCtg                                                                   <  2:160069/219‑1 (MQ=255)                                                                                                                                                       cgTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCATGGGCGCCCgg                                                                                                                                                          >  2:429220/1‑132 (MQ=255)                                                                                                                                                        gTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGtct                                                  <  2:373382/235‑1 (MQ=255)                                                                                                                                                                 ggcGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGAGGGCCGAAGTGCGGGAAGAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACGTCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGa                                                                                                                             <  2:250446/149‑1 (MQ=255)                                                                                                                                                                          tGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACAGCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCt                                                                            <  1:35308/191‑1 (MQ=255)                                                                                                                                                                             tGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGt                                                    >  1:560108/1‑212 (MQ=255)                                                                                                                                                                               gCACAAGGCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTg                                                                                 <  1:180122/181‑1 (MQ=255)                                                                                                                                                                                       cACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGgtcggcggtgtagccctgggcgcgcaggccgatctgcaccacgcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcga                                                                                                                      <  2:461417‑M2/136‑102 (MQ=255)                                                                                                                                                                                            gAGCCACTGATGGCCGAAGTGCGGGAAAAGGGCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCGTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGa                                                                                                                             <  2:305811/124‑1 (MQ=255)                                                                                                                                                                                                  cTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTg                                                                                           <  2:359986/152‑1 (MQ=255)                                                                                                                                                                                                  cTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTg                                                                                           >  1:359988/1‑152 (MQ=255)                                                                                                                                                                                                          cGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGTGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAAcc  >  1:651197/1‑233 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                          CATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCGCCCAGGGCTACACCGCCGACGACTTCAACTGGAGCCGTCGCCAGGGCTTCCGCGTGGTCCAGGCCGAAGAGTGCTGGCACAAGTCACTGGAGCCACTGATGGCCGAAGTGCGGGAAAAGGTCGGCGGTGGCCCGGTTTACCTGTCTTTCGACATCGATGGCATCGACCCGGCCTGGGCGCCCGGTACCGGAACCCCGGAAATCGGCGGCTTGACCACCATCCAGGCGATGGAGATCATTCGCGGCTGCCACGGCCTGGACCTGATCGGCTGTGACCTTGTCGAAGTCTCCCCGCCTTACGACACCACCGGCAACACCTCGCTGCTCGGTGCCAACC  >  AE015451/5138296‑5138729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.