New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	207646 =	NA (NA)	3 (0.070)	3/326	NT	25.9%	coding (13152/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	207647 =	9 (0.210)					coding (13153/26049 nt)	PP_0168	putative surface adhesion protein

CAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTT  >  AE015451/207415‑207882                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            caacaaTGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCACGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCAc                                                                                                                                                                                                                                            >  2:672621/1‑234 (MQ=18)  ccgacatccgcaccttcaacggttgcgatcgatttgatcacagggtcgttggtgccaacgtagacgttgtccggggcagtcacggtggcagtacccacggtgccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgACCg                                                                                                                                                                                                                                          <  1:33816‑M2/4‑1 (MQ=255)          ccAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGc                                                                                                                                                                                                                                  <  1:796406/235‑1 (MQ=31)          ccAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGc                                                                                                                                                                                                                                  <  1:736327/235‑1 (MQ=31)            aGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCga                                                                                                                                                                                                                                >  1:363790/1‑235 (MQ=31)              ccttcaacggttgctatcgatttgatcacagggtcgttggtgccaacgtagacgttgtccggggcagtcacggtggcagtacccacggtgccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaattcactgtggttgttgatcggcagggcgtctttgttggccagggtgatggtgtaagtgatctgtataccttcgatgACCGAAgg                                                                                                                                                                                                                                      <  2:489440‑M2/8‑1 (MQ=255)                 aCCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCAc                                                                                                                                                                                                                          <  2:745470/236‑1 (MQ=31)                  ccATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCAc                                                                                                                                                                                                                          <  1:717945/235‑1 (MQ=31)                  ccATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCAc                                                                                                                                                                                                                          <  1:565141/235‑1 (MQ=31)                      cAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCACtt                                                                                                                                                                                                                        >  1:579235/1‑233 (MQ=31)                           ccGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCAc                                                                                                                                                                                                                          >  1:642014/1‑226 (MQ=31)                            gatcgatttgatcacagggtcgttggtgccaacgtagacgttgtccggggcagtcacggtggcagtacccacggtgccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgAc                                                                                                                                                                                                                                            >  1:807781‑M2/206‑207 (MQ=255)                             ggTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATc                                                                                                                                                                                                                <  2:630082/234‑1 (MQ=31)                                                               agacgttgtccggggcagtcacggtggcagtacccacggtgccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgACCGAAgg                                                                                                                                                                                                                                      <  1:331191‑M2/8‑1 (MQ=255)                                                                                           agtacccacggtgccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgACCGAAGGTGGCGAGATCACTTACACCATc                                                                                                                                                                                                                <  2:539519‑M2/30‑1 (MQ=255)                                                                                                                                            ctaagggtgagggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgACCGAAGGTGGCGAGATCACTTACACCATCAccc                                                                                                                                                                                                            <  1:625197‑M2/34‑1 (MQ=255)                                                                                                                                                                                                          gatggtgtaagtgatctcgccaccttcggtgACCGAAGGTGGCGAGATCACTTACACCAGCAcc                                                                                                                                                                                                             >  2:59607‑M2/32‑64 (MQ=255)                                                                                                                                                                                                                                         ACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGtt  <  1:310271‑M2/236‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            CAACAATGCCCAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGCAACTGGGCGGTGCGGCTACCGTTCAAGTGACCGATACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGTCGGCAAGTT  >  AE015451/207415‑207882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.