New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1949290 =	25 (0.570)	3 (0.070)	3/332	NT	10.9%	coding (365/1746 nt)	PP_1749	GNAT family acetyltransferase
	?	AE015451	1949333 =	25 (0.590)					coding (322/1746 nt)	PP_1749	GNAT family acetyltransferase

GCCCATGACGCTGCCGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTC  >  AE015451/1949130‑1949567                                                                                                                                                                                                            |                                                                                                                                                                                                                                           gCCCATGACGCTGCCGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAgg                                                                                                                                                                                                                   >  2:302112/1‑229 (MQ=255)    cATGACGCTGCCGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCg                                                                                                                                                                                                             >  2:279068/1‑232 (MQ=255)       gACGCTGCCGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACCCCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGt                                                                                                                                                                                                                                          <  2:328727/200‑1 (MQ=255)              ccGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGaa                                                                                                                                                                                               <  1:302114/236‑1 (MQ=255)                gATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACa                                                                                                                                                                                             <  1:476768/236‑1 (MQ=255)                           cgcTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAggg                                                                                                                                                                                  <  1:572537/236‑1 (MQ=255)                                             ccagccaATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACctg                                                                                                                                                                 >  1:84408/1‑235 (MQ=255)                                             ccagccaATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACctg                                                                                                                                                                 >  1:545772/1‑235 (MQ=255)                                                               cACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAggggg                                                                                                                                                                                                                >  1:185083/1‑168 (MQ=255)                                                                               ggTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTcgc                                                                                                                                 >  2:288797/1‑233 (MQ=255)                                                                                   agcagcTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGcc                                                                                                                          >  1:799872/1‑236 (MQ=255)                                                                                           ggCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCTCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCgc                                                                                                                                                                                                   >  2:413345/1‑154 (MQ=255)                                                                                            gCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCt                                                                                                                  >  1:577763/1‑235 (MQ=255)                                                                                            gCGTCGACGGGGAGCACCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGgc                                                                                                                                                                                                                        <  1:129628/133‑1 (MQ=255)                                                                                                 gACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGAGCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGa                                                                                                            <  1:614216/236‑1 (MQ=255)                                                                                                      ccctcagcagctgttcctcgacccgtccgacaccctgcgcctgtggttcaccgactaccgcccggcgcagcggggatttcgcggcttccgcgtgcggcgggcGGTAGTCGGTGAACCACAGGCGCAGGGGGTCGGACGGGTCGAg                                                                                                                                                                                                  >  1:386724‑M2/103‑145 (MQ=255)                                                                                                             cccGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCt                                                                                                   >  1:774230/1‑233 (MQ=255)                                                                                                                      ctcgacccgtccgaccccctgcgcctgtggttcaccgactaccGCCCGCCGCACGCGGAAGCCGCGAAATCCCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAggg                                                                                                                                                                                  >  1:386724‑M1/44‑145 (MQ=255)                                                                                                                         gacccgtccgacacccggcgcctgtgggtcaccgactaccgcccggcgcagcgggtatttcgcggcttccgcgtgcggcgggcGGTAGTCGGTGGACCACAGGCGCAGGGTGTCg                                                                                                                                                                                                             <  1:668737‑M2/32‑1 (MQ=255)                                                                                                                                 cgacaccctgcgcctgtggtccaccgactaccGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGACCCACAGGCGCCGGGTGTCGGACGGGTc                                                                                                                                                                                                     <  1:668737‑M1/83‑1 (MQ=255)                                                                                                                                   ttGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACGGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTa                                                                          >  1:452061/1‑236 (MQ=255)                                                                                                                                   ttGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACATGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGCAGCCGGGTCGGGGTa                                                                          >  1:230349/1‑236 (MQ=255)                                                                                                                                     gATCGCCTGCCCGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAATCACAGGCGCCGGGTGTCGGACGGGTCGACGcaca                                                                                                                                                                                             >  2:66132/1‑119 (MQ=255)                                                                                                                                     gATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAATca                                                                                                                                                                                                                             >  2:66134/1‑87 (MQ=255)                                                                                                                                             gCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAgg                                                                        <  1:291785/228‑1 (MQ=255)                                                                                                                                                            tCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCgg                                                    <  2:799870/233‑1 (MQ=255)                                                                                                                                                             cTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGt                                                                           <  1:19417/209‑1 (MQ=255)                                                                                                                                                                      gagcagcgggtatttcgcggcttccgcgtgcggcgggcGGTAGTCGGTGAACCACAGGCGCAGGGTGTCgg                                                                                                                                                                                                            <  2:386722‑M2/33‑1 (MQ=255)                                                                                                                                                                       cgcACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGCAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGt                                       >  1:604112/1‑235 (MQ=255)                                                                                                                                                                               gAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTgcacggca                               <  1:416246/235‑1 (MQ=255)                                                                                                                                                                                   ccGCGAACTGCCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCgg                                                                                                                                                                                                            <  2:164107/58‑1 (MQ=255)                                                                                                                                                                                                       cgggcGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGc      >  1:644676‑M2/6‑236 (MQ=255)                                                                                                                                                                                                            ggTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTc  >  1:313226/1‑235 (MQ=255)                                                                                                                                                                                                            |                                                                                                                                                                                                                                           GCCCATGACGCTGCCGATAATCGCGCCGCTGTCTTCGTCCTCTGCCAGCCAATACACCGGGCCACCCAAGTGCCGGGGGGTAAGCAGCTCGGCGTCGACGGGGAGCATCCCGCGCGCCTGGTACAGCGTGTTGATCGCCTGCCAGTCGGCGGGGTTCTGTGCCCGCCGCACGCGGAAGCCGCGAAATACCCGCTGCGCCGGGCGGTAGTCGGTGAACCACAGGCGCAGGGTGTCGGACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTC  >  AE015451/1949130‑1949567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.