New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	769920 =	13 (0.500)	3 (0.120)	3/308	NT	18.4%	coding (513/885 nt)	PP_0661	putative Transcriptional regulator AmpR
	?	AE015451	769949 =	14 (0.560)					coding (542/885 nt)	PP_0661	putative Transcriptional regulator AmpR

CGTGCCAGCGCCACCCCGAGCCCCAGCTCCGCCATGCGCAGGGTCGACACCAGCGTGTCGAACTGCAGGCCACTGGAAGAGTCGACCTGATCGGCGCCGACCCGCTCCAGCCAGTAGCCCCACCCCTCCTCGTAACCCAGCACATGCAGCAACGGCACACGGGCCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/770126‑769920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGC  >  AE015451/769949‑770033                                                                                                                                                                                                                                                                                                      CGTGCCAGCGCCACCCCGAGCCCCAGCTCCGCCATGCGCAGGGTCGACACCAGCGTGTCGAACTGCAGGCCACTGGAAGAGTCGACCTGATCGGCGCCGACCCGCTCCAGCCAGTAGCCCCACCCCTCCTCGTAACCCAGCACATGCAGCAACGGCACACGGGCCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGC                                                                                          <  1:328013/204‑1                                                         GTCGAACTGCAGGCCACTGGAAGAGTCGACCTGATCGGCGCCGACCCGCTCCAACCAGTAGCCCCACCCCTCCTCGTAACCCAGCACATGCAGCAACGGCACACGGGCCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGCGGGGCTACTGGCTGGAGCctgtctctta  >  1:241945/1‑226                                                                                          cTCGGCGCCGCCCCGCTCCAGCCAGTAGCCCCACCCCTCCTCGTAACCCAGCACACGCAGCAACGGCACACGGGCCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACCAGGAGGGGTGGGG                          <  2:241941/178‑1                                                                                                        gccCCAGCCAGTAGCCCCACCCCTCCTCGTAACCCAGCACATGCAGCAACGGCACACGGGGCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGG                                             <  1:422477/143‑1                                                                                                                                                                                                                                                                                                      CGTGCCAGCGCCACCCCGAGCCCCAGCTCCGCCATGCGCAGGGTCGACACCAGCGTGTCGAACTGCAGGCCACTGGAAGAGTCGACCTGATCGGCGCCGACCCGCTCCAGCCAGTAGCCCCACCCCTCCTCGTAACCCAGCACATGCAGCAACGGCACACGGGCCAGGTCGCGCGGTTCGCGCAGCGGGCAACCGGCCAGCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/770126‑769920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGC  >  AE015451/769949‑770033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.