New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	769920 =	13 (0.500)	3 (0.120)	3/308	NT	18.4%	coding (513/885 nt)	PP_0661	putative Transcriptional regulator AmpR
	?	AE015451	769949 =	14 (0.560)					coding (542/885 nt)	PP_0661	putative Transcriptional regulator AmpR

TTCTGGCTGGCCCCGCGGCTGGCCGACTTTCGGCGTTCGCACCCGCAGGTGGACATTCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCTGCGCATGGCGGAGCTGGGGCTCGGGGTGGCGCTGGCACG  >  AE015451/769729‑770126                                                                                                                                                                                                                             |                                                                                                                                                                                  tgctggctggCCCCGCGGCTGGCCGACTTTCGGCGTTCGCACCCGCAGGTGGACATTCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCt                                                                                                                                                                       <  1:263386/231‑1 (MQ=255)             ccGCGGCTGGCCGACTTTCGGCGTTCGCACCCGCAGGTGGACATTCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACcgcg                                                                                                                                                                             >  2:314927/1‑215 (MQ=255)                    tGGCCGACTTTCGGCGTTCGCACCCGCAGGTGGACATGCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCTAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGCTGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTtgctg                                                                                                                                                    <  2:485755/233‑1 (MQ=255)                                          cccGCAGGTGGACATTCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCAt                                                                                                                                                 <  1:314931/214‑1 (MQ=255)                                                                      gtcgaactgcaggccactggaagagtcgacctgatcggcgccgacccgctccaaccagtagccccacccctcctcgtaacccagcacatgcagcaacggcacacgggccaggtcgcgcggttcgcgcagcgggcaaccggccagcagcgcgAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGCGGGGCTActggctggagcctgtctctta                                                                                               >  1:241945‑M2/152‑226 (MQ=255)                                                                          tgtgGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGGGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGc                                                                                                                                                            >  1:66935/1‑171 (MQ=255)                                                                                                       ctcggcgccgccccgctccagccagtagccccacccctcctcgtaacccagcacacgcagcaacggcacacgggccaggtcgcgcggttcgcgcagcgggcaaccggccagcagcgcgAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACCAGGAGGGGTgggg                                                                                                                       <  2:241941‑M2/61‑1 (MQ=255)                                                                                                           taagagacaggctccagccagtagccccgcccctcctcgtaacccagcacatgcagcaacggcacacgggccaggtcgcgcggttCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGTTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGac                                                          >  1:241945‑M1/86‑236 (MQ=255)                                                                                                           gaggaaTTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCCACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTCGCCCGCTGCGCGAACCGCGCGCCCTGGCCCGTGTGCCGTTGCTGCAt                                                                                                                                                 <  2:286437/145‑1 (MQ=255)                                                                                                                     gccccagccagtagccccacccctcctcgtaacccagcacatgcagcaacggcacacggggcaggtcgcgcggttcgcgcagcgggcaaccggccagcagcgcgAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTgg                                                                                                                                          <  1:422477‑M2/42‑1 (MQ=255)                                                                                                                                   ccccacccctcctggtaacccagcacatgcagcaacggcacacgggccaggtcgcgcggttCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCGTGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGGCGGCGCCgag                                                                                           <  2:241941‑M1/118‑2 (MQ=255)                                                                                                                                                      ccagcacatgcagcaacggcacacgggccaggtcgcgcggttCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGCCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGctactggctggggc                                                                                                         <  1:422477‑M1/104‑4 (MQ=255)                                                                                                                                                        aGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCtt                                                                              <  2:193669/171‑1 (MQ=255)                                                                                                                                                          cgcCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCt                                         <  1:374589/206‑1 (MQ=255)                                                                                                                                                          cgcCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCt                                         >  2:374585/1‑206 (MQ=255)                                                                                                                                                                       ccgcgCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTgg                                                                                                                                          <  2:51787/92‑1 (MQ=255)                                                                                                                                                                       aCATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCTGCGCCGa                                                                                            >  1:93118/1‑142 (MQ=255)                                                                                                                                                                             tGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCTGCGCa                                    <  2:230600/192‑1 (MQ=255)                                                                                                                                                                             tGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCTGCGCa                                    >  1:230604/1‑192 (MQ=255)                                                                                                                                                                                             aCCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGac                                                          <  1:409903/154‑1 (MQ=255)                                                                                                                                                                                                   GCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCTGCGCATGGCGGAGCTGGGGCTCGGGGTGGCGCTGGCACg  <  1:328013‑M1/204‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                  TTCTGGCTGGCCCCGCGGCTGGCCGACTTTCGGCGTTCGCACCCGCAGGTGGACATTCGCTACATCAGCAACCTGTGGGTCAAGGAGCTGGATGCCGAAGATGATCTGGAAATTCGCTGGGGTAGCGGGCAGTGGGCCGGGGTAGAGGCGCAGCGCCTGACCCGCGACATGCTGGTGCCGGTGTGCGCACCCGCGCTGCTGGCCGGTTGCCCGCTGCGCGAACCGCGCGACCTGGCCCGTGTGCCGTTGCTGCATGTGCTGGGTTACGAGGAGGGGTGGGGCTACTGGCTGGAGCGGGTCGGCGCCGATCAGGTCGACTCTTCCAGTGGCCTGCAGTTCGACACGCTGGTGTCGACCCTGCGCATGGCGGAGCTGGGGCTCGGGGTGGCGCTGGCACG  >  AE015451/769729‑770126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.