New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1084429 =	29 (1.130)	3 (0.120)	3/298	NT	10.3%	coding (254/852 nt)	PP_0939	Carbon‑nitrogen hydrolase family protein
	?	AE015451	1084512 =	25 (1.040)					coding (337/852 nt)	PP_0939	Carbon‑nitrogen hydrolase family protein

ACAGTTCGGGAAAGCGCAGGTCGTAACACACGCTCAGCCCCAGCCGACCGACCGGCGTATCAGCCACCACCACCTGAGCACCCTGTGCGTAGTCATCCGACTCGCGGTAACGGCCCCGGTTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCGGCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1084671‑1084429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaggTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTGGGGCTGAGCGTGTGTTACGACCTGCGCTTTCCCGAACTGTACAGCGCGCTGCGCGCGGCCGGCGCGGAGCTGATAACCGCACCGGCAGCTTTTACCGCAGTGACCGG  >  AE015451/1084512‑1084738                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAGTTCGGGAAAGCGCAGGTCGTAACACACGCTCAGCCCCAGCCGCCCGACCGGCGTATCAGCCGCCACCACCTGAGCACCCTGTGCGTAGTCATCCGACTCGCGGTAACGGCCCCGGTTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGG                                                                                                                                                                                                                                             <  1:415200/235‑1   AGTTCGGGAAAGCGCAGGTCGTAACACACGCTCAGCCCCAGCCGACCGACCGGCGTATCAGCCACCACCACCTGAGCACCCTGTGCGTAGTCATCCGACTCGCGGTAACGGCCCCGGTTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCG                                                                                                                                                                                                                                           <  1:83305/235‑1        GGGAAAGCGCAGGTCGTAACACACGCTCAGCCCCAGCCGACCGACCGGCGTATCAGCCACCACCACCTGAGCACCCTGTGCGTAGTCATCCGACTCGCGGTAACGGCCCCGGTTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCGGCAA                                                                                                                                                                                                                                       >  2:137296/1‑234                                                                                                                        TTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCTCCTCGCCGTGTTCATCGAACAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACTGCG                                                                                                                                                                                                                                           <  2:110700/118‑1                                                                                                                                                                       CGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGG                                                                                                                                                                     >  2:29299/1‑141                                                                                                                                                                           ACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCG                                                                                                                 <  1:29301/189‑1                                                                                                                                                                                             ACCAGCAGCGAGCACGCATGGGCGTTGGCATCGGGATGGCCGAACGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTC                                                                                                                                                                       <  1:52108/117‑1                                                                                                                                                                                                                                           GCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTGGGGCTGAGCGTGTGTTACGACCTGCGCTTTCCCGAACTGTACAGCGCGCTGCGCGCGGCCGGCGCGGAGCTGATAACCGCACCGGCAGCTTTTACCGCAGTGACCGG  <  1:242978/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAGTTCGGGAAAGCGCAGGTCGTAACACACGCTCAGCCCCAGCCGACCGACCGGCGTATCAGCCACCACCACCTGAGCACCCTGTGCGTAGTCATCCGACTCGCGGTAACGGCCCCGGTTGTCGGCCACGTCCACATCAAACAAGTGCAGCTTGTCATACCTTGCCGCCACCTCGCCGTGTTCATCGACCAGCAGCGAGCACGCATGGGCCTTGGCATCGGGATGGCCGAACGGCGGCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1084671‑1084429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaaggTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTGGGGCTGAGCGTGTGTTACGACCTGCGCTTTCCCGAACTGTACAGCGCGCTGCGCGCGGCCGGCGCGGAGCTGATAACCGCACCGGCAGCTTTTACCGCAGTGACCGG  >  AE015451/1084512‑1084738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.