New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1084429 =	29 (1.130)	3 (0.120)	3/298	NT	10.3%	coding (254/852 nt)	PP_0939	Carbon‑nitrogen hydrolase family protein
	?	AE015451	1084512 =	25 (1.040)					coding (337/852 nt)	PP_0939	Carbon‑nitrogen hydrolase family protein

CAGCCAGGACGACGTGCAGACCAACCTGCAGCGTGCCGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTGGG  >  AE015451/1084202‑1084633                                                                                                                                                                                                                                    |                                                                                                                                                                                                             ccggtcactgcggtaaaagctgccggtgcggttatcagctccgcgccggccgcgcgcagcgcgctgtacagttcgggaaagcgcaggtcgtaacacacgctcagccccagccgaccgaccggcgtatcagccaccaccacctgagcaccctgtgcgtagtcatccgactcgcggtaacggccccggttgtcggccacgtccacatcaaacaagtgcagcttgtcataCCTTgccgc                                                                                                                                                                                                      <  1:242978‑M1/9‑1 (MQ=255)     cAGGACGACGTGCAGACCAACCTGCAGCGTGCCGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGtt                                                                                                                                                                                                  >  1:269159/1‑236 (MQ=255)                      cAACCTGCAGCGTGCCGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGATGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCa                                                                                                                                                                                 >  1:276155/1‑236 (MQ=255)                                cGTGCCGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGc                                                                                                                                                                       <  1:172734/236‑1 (MQ=255)                                    ccGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCCCCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTc                                                                                                                                                                                                 <  2:510382/206‑1 (MQ=255)                                          cccTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCg                                                                                                                                                                                       >  1:100069/1‑210 (MQ=255)                                          cccTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGc                                                                                                                                                                                   >  1:207837/1‑214 (MQ=255)                                                 ggAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATg                                                                                                                                                                                    <  2:139517/206‑1 (MQ=255)                                                          cGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACg                                                                                                                                             >  1:512111/1‑236 (MQ=255)                                                            cATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACg                                                                                                                                             >  2:274111/1‑234 (MQ=255)                                                                     gcgcACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCa                                                                                                                                                                                            >  2:509956/1‑178 (MQ=255)                                                                           ggTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAgg                                                                                                                            <  1:477562/236‑1 (MQ=255)                                                                             ttGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAg                                                                                                                                                                               <  1:318334/183‑1 (MQ=255)                                                                                           ggAAGACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCt                                                                                                                 <  2:138108/231‑1 (MQ=255)                                                                                             aaaaCGTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTggc                                                                                                                                   <  2:199682/211‑1 (MQ=255)                                                                                                          cagggggCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTgg                                                                                                                                    <  2:206833/194‑1 (MQ=255)                                                                                                                cgaccgaccggcgtatcagccaccaccacctgagcaccctgtgcgtagtcatccgactcgcggtaacggccccggttgtcggccacgtccacatcaaacaagtgcagcttgtcataCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGt                                                                                                                                      <  1:29301‑M1/73‑1 (MQ=255)                                                                                                                            tgctgcCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACa                                                                                    <  2:233750/227‑1 (MQ=255)                                                                                                                              ctgcCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGc                                                                            <  2:512107/233‑1 (MQ=255)                                                                                                                               tgcCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGAcg                                                                                    >  1:411749/1‑223 (MQ=255)                                                                                                                                         cgcgCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTc                                                              <  1:462300/236‑1 (MQ=255)                                                                                                                                              cGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGAt                                                          <  1:378829/235‑1 (MQ=255)                                                                                                                                                                    ccgactcgcggtaacggccccggttgtcggccacgtccacatcaaacaagtgcagcttgtcataCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTggcg                                                                                                                                  >  2:29299‑M1/65‑141 (MQ=255)                                                                                                                                                                      gactcgcggtaacggccccggttgtcggccacgtccacatcaaacaagtgcagcttgtcataCCTTGCCGCCGTTCGGCCATCCCGATGCCAACGCCCATGCGTGCTCGCTGCTGGt                                                                                                                                                        <  1:52108‑M1/55‑1 (MQ=255)                                                                                                                                                                          ccGTGGTTGACACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTgg                                                                                                                                    <  1:110066/133‑1 (MQ=255)                                                                                                                                                                            gTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGcc                                                                                        >  2:242974/1‑175 (MQ=255)                                                                                                                                                                                  gAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATa                     >  1:137300/1‑236 (MQ=255)                                                                                                                                                                                       gCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACtt                                                                                                           <  2:489621/145‑1 (MQ=255)                                                                                                                                                                                            gcccgcGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGCTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGTCTGATACGCcggtcgg           >  1:246819/1‑236 (MQ=255)                                                                                                                                                                                                     cTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTggg  <  1:274115/236‑1 (MQ=255)                                                                                                                                                                                                               ggATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTg    <  1:509960/224‑1 (MQ=255)                                                                                                                                                                                                                 aTTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACACCCGGGGCCGTTACCGCGAGTCGGCTGACTag                                                    >  1:168280/1‑173 (MQ=255)                                                                                                                                                                                                                              cTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTCGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGAt                                                          <  2:482665/155‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                             CAGCCAGGACGACGTGCAGACCAACCTGCAGCGTGCCGGTGCCCTGTTGGAGCAGGCCGCATTGGGCGGCGCACGGTTGGCGGTGCTGCCGGAAAACTTTGCCGCCATGGGGCGCAAGGACGCTGCTGCCATCGGCCGCGCCGAAGCCTTGGGGGAAGGGCCCATCCTGCCGTGGTTGAAACGCACCGCCCGCGACCTCAAGTTATGGATTGTTGCCGGTACTTTGCCCTTGCCGCCGTTCGGCCATCCCGATGCCAAGGCCCATGCGTGCTCGCTGCTGGTCGATGAACACGGCGAGGTGGCGGCAAGGTATGACAAGCTGCACTTGTTTGATGTGGACGTGGCCGACAACCGGGGCCGTTACCGCGAGTCGGATGACTACGCACAGGGTGCTCAGGTGGTGGTGGCTGATACGCCGGTCGGTCGGCTGGG  >  AE015451/1084202‑1084633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.