New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1587163	17 (0.660)	4 (0.160)	4/308	NT	20.3%	coding (243/909 nt)	PP_1391	Transcriptional regulator, LysR family
	?	AE015451	= 1587173	15 (0.600)					coding (233/909 nt)	PP_1391	Transcriptional regulator, LysR family

CTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1587094‑1587163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAATGACGTGGACCCCAGCCTCATCG  <  AE015451/1587173‑1586943                                                                                                                                                                                                                                                                                                               CTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTCCACGGCGACCTGCAGGCCGCCGTGCATCCGCCGGAAGACGCCCCA                                                                                                                                                                                                   >  1:21687/1‑108            AGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGAT                                                                                                                                          <  1:495931/154‑1                      GCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGACGACGCACCACGGGGGGCACTGCGTATCAGCGTCAGTCCCTCATTCGGCCAGGCACAGCcgg                                                                                                                                               >  2:495927/1‑136                                                     TCCGGCTGCTGCACGGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCtg                                                                      >  2:143906/1‑179                                                                   GGCGACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAATGACGTGAACCCCAGCCTCATCG  >  1:210262/1‑235                                                                                                                                                                                                                                                                                                               CTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1587094‑1587163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCTGCAGGCCGCCGTGCAGCAGCCGGAAGACGCACCAAGGGGGGCACTGCGTATCAGCGTCAGTACCTCATTCGGCCAGGCACAGCTGGTGGATGCAGTGGCCGCCTATGTGCGGCGCTTTCCTGACGTGAAGGTCGAACTGCAGATGCTCGACCGCACCGTCAACCTGGTGGACGAGCGCATCGACCTGGCCATTCGCACCAGCAATGACGTGGACCCCAGCCTCATCG  <  AE015451/1587173‑1586943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.