New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1587163	17 (0.660)	4 (0.160)	4/308	NT	20.3%	coding (243/909 nt)	PP_1391	Transcriptional regulator, LysR family
	?	AE015451	= 1587173	15 (0.600)					coding (233/909 nt)	PP_1391	Transcriptional regulator, LysR family

CGATGAGGCTGGGGTCCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCCGCATGGCGTT  >  AE015451/1586943‑1587393                                                                                                                                                                                                                                       |                                                                                                                                                                                                                             cGATGAGGCTGGGGTTCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgcc                                                                                                                                                                                                                          >  1:210262‑M2/1‑231 (MQ=255)                                                    gcTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGc                                                                                                                                                                       >  1:347050/1‑235 (MQ=255)                                                                   tGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGGGAGGc                                                                                                                                                               >  1:1925/1‑228 (MQ=255)                                                                     caggtgCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccgga                                                                                                                                                                                                            >  2:143906‑M2/3‑163 (MQ=255)                                                                                    aTCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCcagc                                                                                                                                                                                                             >  2:429887/1‑165 (MQ=255)                                                                                                                     cgcACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGc                                                                                                     >  1:177175/1‑236 (MQ=255)                                                                                                                                ggcCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAg                                                                                                                                   <  2:214507/195‑1 (MQ=255)                                                                                                                                         aTCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacct                                                                                                                                                                   <  1:495931‑M2/154‑60 (MQ=255)                                                                                                                                              ccggctgTGCCTGGCCGAATGAGGGACTGACGCTGATACGCAGTGCCCCCCGTGGTGCGTCGTCCGGCTGCTGCACGGCGGCCTGCAGGTcgccgtgcagcagccggaagacgcaccaaggggggcactgcgtatcagc                                                                                                                                                                             >  2:495927‑M2/4‑90 (MQ=255)                                                                                                                                                          ggCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGc                                                                   >  2:267069/1‑233 (MQ=255)                                                                                                                                                                             gCTGATACGCAGTGCCCCCCGTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGAc                                              <  1:501876/235‑1 (MQ=255)                                                                                                                                                                                   aCGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCAGCCTGCAGGTCGCCGGc                                                                                                                                                                                                                       >  2:45429/1‑60 (MQ=255)                                                                                                                                                                                            cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGc                                                                                                                                                                       >  1:492324/1‑99 (MQ=255)                                                                                                                                                                                            cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGc                                                                                                                                                                       <  2:492320/99‑1 (MQ=255)                                                                                                                                                                                            cccccTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGt                                 >  2:479663/1‑233 (MQ=255)                                                                                                                                                                                                  tGGGGCGTCTTCCGGCGGATGCACGGCGGCCTGCAGGTcgccgtggagcagccggaagacgcaccaaggggggcactgcgtatcagcgtcagtacctcattcggccag                                                                                                                                                        >  1:21687‑M2/1‑38 (MQ=255)                                                                                                                                                                                                              cGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATAccc            <  1:198468/236‑1 (MQ=255)                                                                                                                                                                                                               ggCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGcc                                                                              >  2:465477/1‑169 (MQ=255)                                                                                                                                                                                                                gcggctgcACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGGAGATAATCCGCCGCCGCCGACTGGCTg                                        <  1:495159/203‑1 (MQ=255)                                                                                                                                                                                                                       cACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCCGCATGGCGt   >  1:327709/1‑236 (MQ=255)                                                                                                                                                                                                                        aCGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCCGCATGGCGtt  <  1:124191/236‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                             CGATGAGGCTGGGGTCCACGTCATTGCTGGTGCGAATGGCCAGGTCGATGCGCTCGTCCACCAGGTTGACGGTGCGGTCGAGCATCTGCAGTTCGACCTTCACGTCAGGAAAGCGCCGCACATAGGCGGCCACTGCATCCACCAGCTGTGCCTGGCCGAATGAGGTACTGACGCTGATACGCAGTGCCCCCCTTGGTGCGTCTTCCGGCTGCTGCACGGCGGCCTGCAGGTCGCCGGCCAGTTCCAGCAGTTGCCGGCAGCGAGGCAGGGTTTCCTGGCCGGCTGCCGTGAGGCTGAGCTTGCGCGTGGTTCGCTGCATCAGCCGCGTGCCAACCCAGTCTTCCAACTCTGCCAGGTAGCGCGACACGACCGGCCGCGATAATTGCAGATAATCCGCCGCCGCCGACTGGCTGCCCAGGTCGATGACTGTGACGAATACCCGCATGGCGTT  >  AE015451/1586943‑1587393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.