New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1737987 =	48 (1.860)	18 (0.780)	14/284	NT	32.5%	coding (32/348 nt)	yffB	putative glutathione‑dependent thiol reductase
	?	AE015451	= 1777401	32 (1.390)					intergenic (+135/+157)	PP_5476/PP_1585	conserved protein of unknown function/putative Antidote protein

CCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738235‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCA  <  AE015451/1777401‑1777171                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTT                                                                                                                                                                                                                                                         <  1:192630/233‑1       acagTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                                                                                                                                 <  1:344488/231‑1             CATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATAGTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTAC                                                                                                                                                                                                                                                       >  1:176309/1‑223                           CCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTT                                                                                                                                                                                                                             <  1:427676/235‑1                                     AGGCTACATGACGCAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                                                                                                                                  <  1:194338/236‑1                                     AGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                                                                                                                                  <  1:482722/236‑1                                      GGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAA                                                                                                                                                                                                                          >  2:209075/1‑227                                                             GATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCC                                                                                                                                                                                                                                  >  2:489052/1‑196                                                                                 TCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTTTTTACGGCATCAAAGCCTG                                                                                                                                                                                                                                         >  2:357708/1‑169                                                                                       TTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAA                                                                                                                                                                                                  >  2:181309/1‑202                                                                                                         TCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTC                                                                                                                                               <  1:140213/235‑1                                                                                                                          GTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                                                                                                                                 <  2:497483/120‑1                                                                                                                          GTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                                                                                                                                 >  1:497487/1‑120                                                                                                                              CGCTTAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTC                                                                                                                                               <  1:38674/214‑1                                                                                                                              CGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCATCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAGAGACTGGGACGCCA                                                                                                                                                                                                                                 >  2:325181/1‑132                                                                                                                                             TGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTC                                                                                                                                               <  1:181313/199‑1                                                                                                                                                     AATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCGTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGATAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTG                                                                                                          <  2:481903/228‑1                                                                                                                                                             cACTAATGTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGCTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAG                                                                                                                                    <  1:485139/193‑1                                                                                                                                                               CTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATT                                                                                                             >  2:449925/1‑215                                                                                                                                                                                   GGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTAGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAACCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTC                                                                     <  1:413629/235‑1                                                                                                                                                                                           TTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCA                                                            >  1:43715/1‑236                                                                                                                                                                                                              CCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAAT                                                                                                                                                                                   >  2:39473/1‑98                                                                                                                                                                                                                    AATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACG                                                                                             >  1:2166/1‑178                                                                                                                                                                                                                    AATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGA                                                                                                                                   >  2:388840/1‑140                                                                                                                                                                                                                                          ACGGCATCCAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTACATCACTGCCTTAAAGCAACTATGG                                                                                                                                                                               >  2:22365/1‑74                                                                                                                                                                                                                                          ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAAC             <  1:39476/236‑1                                                                                                                                                                                                                                          ACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACC                                                             >  1:410989/1‑188                                                                                                                                                                                                                                            GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAAC             <  2:222921/234‑1                                                                                                                                                                                                                                            GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAAC             >  2:216011/1‑234                                                                                                                                                                                                                                                    AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAc                                                           >  1:368998/1‑179                                                                                                                                                                                                                                                    AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCC   <  1:406594/236‑1                                                                                                                                                                                                                                                    AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCC    >  1:158348/1‑235                                                                                                                                                                                                                                                     GCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCA  <  1:440679/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738235‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCA  <  AE015451/1777401‑1777171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.