| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1797362 = | 34 (1.320) | 4 (0.160) | 4/306 | NT | 10.7% | coding (63/777 nt) | lpxA | Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| ? | AE015451 | 1797450 = | 34 (1.370) | coding (151/777 nt) | lpxA | Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase | |||||
GATAACGGTGCCCTCCCCGATTTCTACATCAGGGCCAACGATCGACCAAGGGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1797419‑1797362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGT > AE015451/1797450‑1797559 GATAACGGTGCCCTCCCCGATTTCTACATCAGGGCCAACGATCGACCAAGGGCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGT > 1:344347/1‑168GATAACGGTGCCCTCCCCGATTTCTACATCAGGGCCAACGATCGACCAAGGGCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGT < 2:344343/168‑1 ATAACGGTGCCCTCCCCGATTTCTACATCAGGGCCAACGATCGACCAAGGGCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGCGCAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGACCAGCGACCACA > 2:66875/1‑163 CGATTTCTACATCAGCGCCAACGATCGACCAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCG < 1:294602/80‑1 CCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCC > 1:475137/1‑57 CCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCC < 2:475133/57‑1 GATAACGGTGCCCTCCCCGATTTCTACATCAGGGCCAACGATCGACCAAGGGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1797419‑1797362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGT > AE015451/1797450‑1797559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |