New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1797362 =	34 (1.320)	4 (0.160)	4/306	NT	10.7%	coding (63/777 nt)	lpxA	Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
	?	AE015451	1797450 =	34 (1.370)					coding (151/777 nt)	lpxA	Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase

CGGTTCCGACAAACTGCGTTTCCGTCAGCCGGTTCTGCCGGGTGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGTGATTCGCGAAGGGG  >  AE015451/1797132‑1797573                                                                                                                                                                                                                                       |                                                                                                                                                                                                                    cGGTTCCGACAAACTGCGTTTCCGTCAGCCGGTTCTGCCGGGTGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCgg                                                                                                                                                                                                                >  1:396271/1‑236 (MQ=255)   gTTCCGACAAACTGCGTTTCCGTCAGCCGGTTCTGCCGGGTGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTc                                                                                                                                                                                                                  >  2:204967/1‑232 (MQ=255)   gTTCCGACAAACTGCGTTTCCGTCAGCCGGTTCTGCCGGGTGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGcc                                                                                                                                                                                                              >  1:382085/1‑236 (MQ=255)                           ggCCGGTTCGGCCGGGGGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCCCCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTgg                                                                                                                                                                                                         <  1:92024/216‑1 (MQ=255)                                                                        tCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCAtg                                                                                                                                                  >  1:93325/1‑227 (MQ=255)                                                                           gCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTg                                                                                                                                                                                               <  2:462081/179‑1 (MQ=255)                                                                             cGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCCAGCTGGCCGACGGCGTCGAGGTc                                                                                                                                                                                                                  <  2:360524/158‑1 (MQ=255)                                                                                 aaaGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGGCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCAtgt                                                                                                                                                 >  1:87938/1‑219 (MQ=255)                                                                                          tCTGGAAGTGCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAACTCACCTGCGCGGAACCCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAg                                                                                                                                      <  1:44387/221‑1 (MQ=255)                                                                                           cTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTc                                                                                                  >  2:314076/1‑228 (MQ=255)                                                                                            tGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGc                                                                                                                     <  1:204971/236‑1 (MQ=255)                                                                                                  ttCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATc                                                                                                                        <  1:225763/227‑1 (MQ=255)                                                                                                         gCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTg                                                                                                                                                                                               <  2:441585/149‑1 (MQ=255)                                                                                                         gCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAAcc                                                                                                           >  2:182576/1‑233 (MQ=255)                                                                                                            gcgcCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCgggg                                                                                                                                                                          <  2:382081/167‑1 (MQ=255)                                                                                                                         acattgtgatcgccgatcaccaggcgcgtcggctcacccttgtacttaaggtccggggtgtcttcaccgatcgaggaaaactgaaagatacggttgtgcttgccgatgcgGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATc                                                                                                                                                            >  1:344347‑M1/111‑168 (MQ=255)                                                                                                                         acattgtgatcgccgatcaccaggcgcgtcggctcacccttgtacttaaggtccggggtgtcttcaccgatcgaggaaaactgaaagatacggttgtgcttgccgatgcgGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATc                                                                                                                                                            <  2:344343‑M1/58‑1 (MQ=255)                                                                                                                             tgtggtcgctggtcaccaggcgcgtcggctcacccttgtacttaaggtccggggtgtctgcgccgatcgaggaaaactgaaagatacggttgtgcttgccgatgcgGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTAt                                                                                                                                                             >  2:66875‑M1/107‑163 (MQ=255)                                                                                                                             aaGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGAt                                                                                     >  1:167878/1‑235 (MQ=255)                                                                                                                                  ggTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCGTGATCTAGACATCGGGGAGGGCACCGTTATCGGCCCGCAtggtgag                                                                                                                                             >  2:231026/1‑172 (MQ=255)                                                                                                                                                aaaTCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGAc                                                                  <  1:446543/235‑1 (MQ=255)                                                                                                                                                                       cTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGAc                                           >  1:315331/1‑235 (MQ=255)                                                                                                                                                                       cTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGCCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATc                                                                                                                                                                                                   >  2:113524/1‑83 (MQ=255)                                                                                                                                                                           gAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCt                                                                                         <  2:167874/185‑1 (MQ=255)                                                                                                                                                                             cttCGATTGACCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAgg                                                     <  2:139082/218‑1 (MQ=255)                                                                                                                                                                              gtCGATTGACCCGCGGGCCATTATCTATCCGTCGGCCAGGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGa                                                                                                                                                                                        <  2:105836/86‑1 (MQ=255)                                                                                                                                                                                gggtgtcttcaccgatcgaggaaaactgaaagatacggttgtgcttgccgatgcggg                                                                                                                                                                                                                    >  1:475137‑M1/56‑57 (MQ=255)                                                                                                                                                                                gggtgtcttcaccgatcgaggaaaactgaaagatacggttgtgcttgccgatgcggg                                                                                                                                                                                                                    <  2:475133‑M1/2‑1 (MQ=255)                                                                                                                                                                                 gATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGa                                >  1:407198/1‑236 (MQ=255)                                                                                                                                                                                     gATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGAcc                                                                 >  1:308867/1‑199 (MQ=255)                                                                                                                                                                                      aTCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGca                                                                                                                <  2:247928/151‑1 (MQ=255)                                                                                                                                                                                                cgaggaaaactgaaagatacggttgtgcttgccgatgcgGGTCGGGCCTTGGTCGATCGTTGGCGCTGATGTAGAAATCg                                                                                                                                                                             <  1:294602‑M1/41‑1 (MQ=255)                                                                                                                                                                                                 aTTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGGAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGcg                                                                                                                >  2:92896/1‑139 (MQ=255)                                                                                                                                                                                                    aTCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATcac                     >  1:514997/1‑228 (MQ=255)                                                                                                                                                                                                     tCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTg                                    >  2:378678/1‑212 (MQ=255)                                                                                                                                                                                                        ctCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGAc                                                                  <  1:386512/178‑1 (MQ=255)                                                                                                                                                                                                             tCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGTGATTCGCGAAgg    >  1:324012/1‑236 (MQ=255)                                                                                                                                                                                                                gCCAAGCTGGGCGACGGCGTCGAGGCCGGCCCTTGGTCGACCGTTGGCCCTGATGCAGAAATCGGGGAGGGCACCGTTATCGTCCCCCATGTTGTGCTCAAAGGCCCGACCCGAATCGGCAAGCACAACCGTACCTTTCAGtc                                                                                              >  2:121966/1‑142 (MQ=255)                                                                                                                                                                                                                gCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGa                                                                                                                                                                                        >  1:497753/1‑53 (MQ=255)                                                                                                                                                                                                                gCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGa                                                                                                                                                                                        <  2:497749/53‑1 (MQ=255)                                                                                                                                                                                                                gCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGTGATTCGCGAAgggg  <  1:182580/235‑1 (MQ=255)                                                                                                                                                                                                                                gCGTCGAGGTCGGCCGTTGGTCGATCGTTGGCCCTGGTGTAGAAAGCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGTGATTCGCGAAg     <  2:442312/216‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                    CGGTTCCGACAAACTGCGTTTCCGTCAGCCGGTTCTGCCGGGTGACCAGCTTGTGCTGGAAGCCAAGTTCCTCAGCCGTAAAAGCATGATCTGGAAGTTCGAGTGCCGCGCCCTTGTCGATGGCAAGCCGGTCTGCTCGGCAGAAATCACCTGCGCGGAACGCTCCCTATGAATTCGATTGATCCTCGGGCCATTATCGATCCGTCGGCCAAGCTGGCCGACGGCGTCGAGGTCGGCCCTTGGTCGATCGTTGGCCCTGATGTAGAAATCGGGGAGGGCACCGTTATCGGCCCGCATGTTGTGCTCAAAGGCCCGACCCGCATCGGCAAGCACAACCGTATCTTTCAGTTTTCCTCGATCGGTGAAGACACCCCGGACCTTAAGTACAAGGGTGAGCCGACGCGCCTGGTGATCGGCGATCACAATGTGATTCGCGAAGGGG  >  AE015451/1797132‑1797573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.