| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1811415 = | 18 (0.700) | 3 (0.140) | 3/272 | NT | 18.0% | intergenic (+22/+106) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/Transcriptional regulator, LysR family |
| ? | AE015451 | 1811495 = | 12 (0.540) | intergenic (+102/+26) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/Transcriptional regulator, LysR family | |||||
GGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1811555‑1811415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCT > AE015451/1811495‑1811558 GGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGTGTCCAACCACCGATGCAATCCACTGTAGGAGCGGGGTTACCC > 1:330124/1‑136 GGGTAAACCCGCTCCTACGACGGTCTGTGTCCATCCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTA < 1:54844/85‑1 TACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCT > 1:449614/1‑124 TACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCT < 2:449610/124‑1 TGTAGGAGCGGGTTTACCCGCGAAGAGGC > 2:84735/1‑29 TGTAGGAGCGGGTTTACCCGCGA > 2:87654/1‑23 GTAGGAGCGGGTTTACCCGCGAAGAG > 2:52057/1‑26 TTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAA > 1:119579/1‑70 TTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAA < 2:119575/70‑1 CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCG < 2:49567/62‑1 GGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1811555‑1811415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCT > AE015451/1811495‑1811558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |