New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 227901827 (1.050)3 (0.120) 3/302 NT 10.2% coding (158/2082 nt) fadH 2,4‑dienoyl‑CoA reductase
?AE015451 = 2279057 27 (1.100)coding (197/2082 nt) fadH 2,4‑dienoyl‑CoA reductase

TAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2278779‑2279018
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccccggGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCGGGGCGCTCTTCGAGGCCGGTGTGCATCGAGCCCATCAGGGTGCGGTTGCGCAAGGTGGTAAAGCCCAGGTCCAGCGGAGCAAGCAGGTGCGGGTAGCGGTCGGCGGCCATGGAAAGGTCCCCTGATGGCGTG  <  AE015451/2279057‑2278884
                                                                                                                                                                                                                                                                                                                                                                                                                              
TAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCC                                                                                                                                                                                    <  1:419001/236‑1
                                                                                                                                                                      GACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCG                                                                                                                                      <  1:251049/116‑1
                                                                                                                                                                      GACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCG                                                                                                                                      >  2:251045/1‑116
                                                                                                                                                                                                                                 CGAAGAGCGCCCCGGGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCGGGGCGCTCTTCGAGGCCGGTGTGCATCGAGCCCATCAGGGTGCGGTTGCGCAAGGTGG                                                                            >  1:38094/1‑115
                                                                                                                                                                                                                                        CGCCCCGGGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGC                                                                                                                                           >  1:342298/1‑45
                                                                                                                                                                                                                                             CGGGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCGGGGCGCTCTTCGAGGCCGGTGTGCATCGAGCCCATCAGGGTGCGGTTGCGCAAGGTGGTAAAGCCCAGGTCCAGCGGAGCAAGCAGGTGCGGGTAGCGGTCGGCGGCCATGGAAAGGTCCCCTGATGGCGTG  >  1:471683/1‑177
                                                                                                                                                                                                                                                                                                                                                                                                                              
TAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2278779‑2279018
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccccggGCGCGCTCGGCAAAGTAAGCTGCCATGCGCTCGAAGCCGCCGGGGCGCTCTTCGAGGCCGGTGTGCATCGAGCCCATCAGGGTGCGGTTGCGCAAGGTGGTAAAGCCCAGGTCCAGCGGAGCAAGCAGGTGCGGGTAGCGGTCGGCGGCCATGGAAAGGTCCCCTGATGGCGTG  <  AE015451/2279057‑2278884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.