New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2279018	27 (1.050)	3 (0.120)	3/302	NT	10.2%	coding (158/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase
	?	AE015451	= 2279057	27 (1.100)					coding (197/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase

TAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGC  >  AE015451/2278822‑2279247                                                                                                                                                                                                     |                                                                                                                                                                                                                                      tAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAgcgc                                                                                                                                                                                                  <  2:194243/234‑1 (MQ=255)                     cgacgGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAgc                                                                                                                                                                                                                            <  2:411225/188‑1 (MQ=255)                                      cAGTGAGGTGCACGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCAtt                                                                                                                                                           <  1:478725/236‑1 (MQ=255)                                               gCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCaa                                                                                                                                                   >  1:156861/1‑235 (MQ=255)                                                 ccGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAgcgc                                                                                                                                                                                                  <  1:195834/186‑1 (MQ=255)                                                 ccGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAgcgc                                                                                                                                                                                                  >  2:195830/1‑186 (MQ=255)                                                 ccGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGTCGGCATTGCGCCCAat                                                                                                                                                  >  1:413181/1‑234 (MQ=255)                                                               cACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCccg                                                                                                                                                                                             >  1:471683‑M2/1‑174 (MQ=255)                                                                          gggACCTTTCCATGGCCGTCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCg                                                                                                                       <  1:294640/236‑1 (MQ=255)                                                                               cTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCTGtctcttat                                                                                                                   >  1:396383/1‑228 (MQ=255)                                                                                     aTGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCggg                                                                                                                                      >  1:358954/1‑210 (MQ=255)                                                                                        gccgccGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGaa                                                                                                                                            <  2:396379/201‑1 (MQ=255)                                                                                               aCCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCAt                                                                                                                                                            >  2:121344/1‑178 (MQ=255)                                                                                               aCCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGGGCGGCAACGCTCAGCACCGAGGaa                                                                                                  >  1:354594/1‑236 (MQ=255)                                                                                               aCCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGACGGGCTCGATGCACACCGGCCTAGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCtt                                                                                                                                                                                                                >  2:336358/1‑126 (MQ=255)                                                                                                    tACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAgg                                                                                              <  1:225608/235‑1 (MQ=255)                                                                                                      cccGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAg                                                                                                                                           >  1:226703/1‑188 (MQ=255)                                                                                                      cccGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCGTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATTAAg                                                                                                                                           <  2:226699/188‑1 (MQ=255)                                                                                                                   gctCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCAATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTa                                                                                                                                 >  2:185100/1‑185 (MQ=255)                                                                                                                            gACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGgcgcgctcggcaaagtaagctgccatgcgctcgaagccgccg                                                                                                                                                                                             <  1:251049‑M1/116‑43 (MQ=255)                                                                                                                            gACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGgcgcgctcggcaaagtaagctgccatgcgctcgaagccgccg                                                                                                                                                                                             >  2:251045‑M1/1‑74 (MQ=255)                                                                                                                             aCCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAg                                                                    <  1:297999/236‑1 (MQ=255)                                                                                                                                         ccaccTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCccggggcgctcttcg                                                                                                                                                                                 >  1:38094‑M2/1‑100 (MQ=255)                                                                                                                                                     aCCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCa                                                                         <  2:156857/207‑1 (MQ=255)                                                                                                                                                         cACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCg                                                                            <  1:369769/200‑1 (MQ=255)                                                                                                                                                                   ggCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGa                               >  1:485375/1‑235 (MQ=255)                                                                                                                                                                                 cGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGgc                >  1:322823/1‑236 (MQ=255)                                                                                                                                                                                 cGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGCGCACGGTGCCGGTGGCCAGATCTGCCTGCAGAtc                             >  2:333074/1‑222 (MQ=255)                                                                                                                                                                                   gCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGgcgc              <  1:185104/236‑1 (MQ=255)                                                                                                                                                                                       cGAAGAGCGCCCCGGgcgcgctcggcaaagtaagctgccatgcgctcgaagccgccggggcgctcttcgaggccggtgtgcatcgagcccatcagggtgcggttgcgcaaggtgg                                                                                                                                   >  1:38094‑M1/1‑15 (MQ=255)                                                                                                                                                                                       cGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCg                                                                 >  2:251660/1‑181 (MQ=255)                                                                                                                                                                                       cGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTa            >  2:475980/1‑234 (MQ=255)                                                                                                                                                                                              cgcCCCGGgcgcgctcggcaaagtaagctgccatgcgctcgaagc                                                                                                                                                                                                  >  1:342298‑M1/1‑8 (MQ=255)                                                                                                                                                                                                 cccGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCg                                                                                 >  2:162512/1‑155 (MQ=255)                                                                                                                                                                                                  ccGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGc  <  2:322819/233‑1 (MQ=255)                                                                                                                                                                                                   cggcggCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCccggggcgctcttcgaggccggtgtgcatcgagcccatcagggtgcggttgcgcaaggtggtaaagcccaggtc                                                                                                                      >  2:251045‑M2/1‑42 (MQ=255)                                                                                                                                                                                                   cggcggCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCccggggcgctcttcgaggccggtgtgcatcgagcccatcagggtgcggttgcgcaaggtggtaaagcccaggtc                                                                                                                      <  1:251049‑M2/116‑75 (MQ=255)                                                                                                                                                                                                   cGGgcgcgctcggcaaagtaagctgccatgcgctcgaagccgccggggcgctcttcgaggccggtgtgcatcgagcccatcagggtgcggttgcgcaaggtggtaaagcccaggtccagcggagcaagcaggtgcgggtagcggtcggcggccatggaaaggtcccctgatggcgtg                                                         >  1:471683‑M1/1‑3 (MQ=255)                                                                                                                                                                                                     |                                                                                                                                                                                                                                      TAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCACCTTGCGCAACCGCACCCTGATGGGCTCGATGCACACCGGCCTCGAAGAGCGCCCCGGCGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGC  >  AE015451/2278822‑2279247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.