New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3674369	21 (0.810)	4 (0.160)	4/300	NT	14.1%	coding (187/573 nt)	PP_3238	putative Transcriptional regulator PyrR
	?	AE015451	= 3674401	29 (1.190)					coding (155/573 nt)	PP_3238	putative Transcriptional regulator PyrR

ACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3674140‑3674369 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagcGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCCGAACTGGGTG  <  AE015451/3674401‑3674168                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCAGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                                   <  1:486063/223‑1                                                 GCGCAGGGGCGTGGCAGAGAGTGCCCTGCGTAGAGCACGGCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                                   <  2:95043/175‑1                                                                                                                                     gGTTCCGGGTTTTCGGTGAGTTGGGTATGCGCAGGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                                   <  2:412989/90‑1                                                                                                                                                                         AAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGTGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCGCTGAACGGTGCTGCGCCATTGCCGCTCTACC                                                                                                                                                                                      >  1:253412/1‑116                                                                                                                                                                                                 CGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGCGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAG                                                                                                                                                              >  1:325832/1‑116                                                                                                                                                                                                         CTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGCTCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCT                                                                                                 >  2:414795/1‑169                                                                                                                                                                                                                    AGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGAACAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTG                                                                           >  1:509/1‑180                                                                                                                                                                                                                                      CGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCCGAACTGGGTG  <  1:492454/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3674140‑3674369 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagcGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCCGAACTGGGTG  <  AE015451/3674401‑3674168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.