New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 3674369 | 21 (0.810) | 4 (0.160) | 4/300 | NT | 14.1% | coding (187/573 nt) | PP_3238 | putative Transcriptional regulator PyrR |
? | AE015451 | = 3674401 | 29 (1.190) | coding (155/573 nt) | PP_3238 | putative Transcriptional regulator PyrR |
CACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTACCCGGGCACCTTGAGGTGG > AE015451/3674168‑3674616 | cACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCg < 1:492454‑M2/235‑2 (MQ=255) agagTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCa > 1:438281/1‑236 (MQ=255) gCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTccc > 2:505927/1‑196 (MQ=255) aTCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAg > 1:354356/1‑235 (MQ=255) ccaccaGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGa < 1:349872/197‑1 (MQ=255) aGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAAt > 2:375257/1‑194 (MQ=255) cAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGTTCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCgctgcgccattgccgctct > 1:509‑M2/1‑161 (MQ=255) aGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGAGCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCgctgcgccattgccgctctacccgatcaag > 2:414795‑M2/1‑139 (MQ=255) ttCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGAt < 1:477620/236‑1 (MQ=255) gggTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTc < 1:153237/234‑1 (MQ=255) agtATGCGCATGCAAGAGGCGCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATg < 2:1237/139‑1 (MQ=255) gcgcATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGa > 2:153233/1‑190 (MQ=255) aTGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATg > 1:151448/1‑236 (MQ=255) aaGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCCGATCGTCTTCGTCATACAGGCGAACCCTCGCTGGAg > 2:390790/1‑235 (MQ=255) agGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCgg < 1:384100/235‑1 (MQ=255) aGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGAtt > 1:516869/1‑236 (MQ=255) tcTGCATAGCGCTTGACCTGGAGGGGGTAGAGCGGCAATGGCGCAGCCCCGTTCAGTGCTTGCAGGTGCCGTTGCAGGCGCTGCGCCAGCGGCTCACCAcgcc < 2:102648/103‑1 (MQ=255) cTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCgctgcgccattgccgctctacccgatcaaggtcaagcg > 1:325832‑M2/1‑78 (MQ=255) cATAGCGCTTGACCTTGATCGGGTAGCGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTCGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGc < 1:175936/217‑1 (MQ=255) tGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTAt < 1:288287/236‑1 (MQ=255) cTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTgg > 1:188970/1‑235 (MQ=255) ggTAGAGCGGCAATGGCGCAGCACCGTTCAGCGCTTGCAGGTGCAGTTGCAGGCgctgcgccattgccgctctacacgatcaaggtcaagcgctatgcagacgacctgagcctctt > 1:253412‑M2/1‑54 (MQ=255) gTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGcc < 1:31046/136‑1 (MQ=255) gagCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTAGCAGCGCGACtt > 2:107586/1‑98 (MQ=255) tGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGGTc > 1:407068/1‑150 (MQ=255) gcagcaCCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTAcc < 1:375261/235‑1 (MQ=255) cagcaCCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTACCCg > 1:392102/1‑236 (MQ=255) gcaCCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAgg < 2:151444/159‑1 (MQ=255) ccGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTga > 1:297439/1‑203 (MQ=255) aGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGCCGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCa > 1:254599/1‑144 (MQ=255) aGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCg > 1:76545/1‑213 (MQ=255) ttGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTACCCGGGCACCTTGAGGTgg < 2:354352/235‑1 (MQ=255) ttGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTACCCGGGCACCTTGAGGTg > 2:306733/1‑234 (MQ=255) tGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGGCGTAGGCAAGCAGGCCATGGCCTGGCGGGCCAt < 2:309604/92‑1 (MQ=255) | CACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCACCGTTCAGTGCTTGCAGGTGCAGTTGCAGGCGCTGCGCCAGCGGCTCACCACGCCGCTGAATGCCTACCAGCGCGACTTCAGACGTAGGCAAGCAGGCCATGGCCTGGCGGGCCATCGAGCGCAGCACACTGTCCAGATCGTCTTCGTCATACAGGCGAACCCTCGATGGAGCGGGGCGATTCATGGTGTTTTTCCTTTATTGGATATCACTCTGTTCGGGAGCCTACCCGGGCACCTTGAGGTGG > AE015451/3674168‑3674616 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |