New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3744686	18 (0.700)	5 (0.200)	5/304	NT	22.6%	coding (970/1002 nt)	paoB	promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit
	?	AE015451	= 3744689	17 (0.690)					coding (973/1002 nt)	paoB	promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit

GCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3744478‑3744686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCAGCCCGGGTGAACAGCGCTTCGCAAGGCGCCTGGCCGGCCAGCATGCGCTCCACAACCGGGTCTCGCCACGGCTTGTGAGCAACGCCGCCCAGCGCCAGGCGAGCTTGCCGGATCACCTGGCCATCGAAGC  <  AE015451/3744689‑3744456                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGC                                                                                                                                                                                                                                              >  1:61400/1‑207                                                                                                                                             TGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGATGCGGCGCCGCGCGCCGCGTCATCCAATGCCC                                                                                                                                                                                                                    >  2:202401/1‑93                                                                                                                                                       CGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCCGCGCGCCGCGTCATCCAATGCCCGCGCAA                                                                                                                                                                                                              >  1:100835/1‑89                                                                                                                                                            TCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCATAGGTTTTGCACCTTGCAGCAACGTTGTTGCAGC                                                                                                                                  >  1:45732/1‑160                                                                                                                                                                                                  TTGGATGACGCGGCGCCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCA                                                                                                                                    <  1:292118/120‑1                                                                                                                                                                                                  TTGGATGACGCGGCGCCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCA                                                                                                                                    >  2:292114/1‑120                                                                                                                                                                                                           GCGGCGCCGCGCGCCGCGTCATCCACTGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCAGCCCGGGTGAACAGCGCTTCGCAAGGCGCCTGGCCGGCCAGCATGCG                                                                                     <  1:111537/158‑1                                                                                                                                                                                                            CGGCGCGGCGCGCCGCGTCATCCAATGCGCGCACAATTGCACGTTGGGCGAGCGTGACCGTGAAGCCGGTGTGGCTCAGAGGTGTTGCACCTTGCAGCAACGTTTTTGCAGCCCGGGTGAACA                                                                                                                       <  2:19225/123‑1                                                                                                                                                                                                                 CCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCAGCCCGGGTGAACAGCGCTTCGCAAGGCGCCTGGCCGGCCAGCATGCGCTCCACAACCGGGTCTCGCCACGGCTTGTGAGCAACGCCGCCCAGCGCCAGGCGAGCTTGCCGGATCACCTGGCCATCGAAGC  <  1:139028/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3744478‑3744686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgcCGCGCGCCGCGTCATCCAATGCCCGCACAATTGCACGTTGGGCGAGCGTGACCTTGAAGCCGTTGTGGCTCAGAGGTTTTGCACCTTGCAGCAACGTTTTTGCAGCCCGGGTGAACAGCGCTTCGCAAGGCGCCTGGCCGGCCAGCATGCGCTCCACAACCGGGTCTCGCCACGGCTTGTGAGCAACGCCGCCCAGCGCCAGGCGAGCTTGCCGGATCACCTGGCCATCGAAGC  <  AE015451/3744689‑3744456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.