New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3744686	18 (0.700)	5 (0.200)	5/304	NT	22.6%	coding (970/1002 nt)	paoB	promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit
	?	AE015451	= 3744689	17 (0.690)					coding (973/1002 nt)	paoB	promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit

GCTTCGATGGCCAGGTGATCCGGCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCAGGCGCGTTACGCGGGCGAATACCCCGAAGTGGGCCTGCTCCATGGCAGCGTCGTGTCCAGTACCATCGCCCGAGGTCGGGTACTCAACATCGACAGTACG  >  AE015451/3744456‑3744885                                                                                                                                                                                                                                          |                                                                                                                                                                                                     gCTTCGATGGCCAGGTGATCCGGCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGg                                                                                                                                                                                                     <  1:139028‑M2/235‑2 (MQ=255)        tGGCCAGGTGATCCGGCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCt                                                                                                                                                                                              >  1:334746/1‑235 (MQ=255)                               gCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGAc                                                                                                                                                                              >  2:147736/1‑228 (MQ=255)                                ccTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACggggg                                                                                                                                                                                      <  1:332574/219‑1 (MQ=255)                                        tGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTCTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCca                                                                                                                                                                <  1:236525/233‑1 (MQ=255)                                                 ttGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCg                                                                                                                                                    <  1:147740/236‑1 (MQ=255)                                                       acaAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGt                                                                                                                                              >  1:229574/1‑236 (MQ=255)                                                                                  aGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACgggt                                                                                                                                                                                       >  1:312601/1‑167 (MQ=255)                                                                                    cgcATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCAGTGGATGACGCGGCGCGCGgcgccgc                                                                                                                                                                                               <  1:111537‑M2/158‑8 (MQ=255)                                                                                         gCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACg                                                                                                                                               >  1:259897/1‑201 (MQ=255)                                                                                            ggccggccAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCg                                                                                                                                                    <  1:135689/193‑1 (MQ=255)                                                                                                 gccAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCg                                                                                                                         >  1:353858/1‑215 (MQ=255)                                                                                                 gccAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCa                                                                                                      >  1:303691/1‑234 (MQ=255)                                                                                                                      tGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAACACCTCTGAGCCACACCGGCTTCACGGTCACGCTCGCCCAACGTGCAATTGTGCGCGCATTGGATGACGCGGCGCGCCgcgccg                                                                                                                                                                                                <  2:19225‑M2/123‑7 (MQ=255)                                                                                                                        tgcACCCGGGCTGCCAAAACGTTGCTGCAAGGTGCAAAGCCTCTGAGCCGCAACGGCTTCAAGGTCGCGCGCGCCCACCGTGCAGTTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACg                                                                                                                                                                                <  2:100186/135‑1 (MQ=255)                                                                                                                                 gCTGCAACAACGTTGCTGCAAGGTGCAAAACCTATGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGgcgccgcgtcatccaatgcccgcacaattgcacgttgggcgagcgtgaccttga                                                                                                                                                >  1:45732‑M2/1‑106 (MQ=255)                                                                                                                                   tGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGgcgccgcgtcatccaa                                                                                                                                                                                      <  1:292118‑M2/120‑17 (MQ=255)                                                                                                                                   tGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGgcgccgcgtcatccaa                                                                                                                                                                                      >  2:292114‑M2/1‑104 (MQ=255)                                                                                                                                   tGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTccc                                                                                                                                           >  1:207551/1‑163 (MQ=255)                                                                                                                                   tGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTccc                                                                                                                                           <  2:207547/163‑1 (MQ=255)                                                                                                                                                                              ggCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCAGGCGCGTTACGCGGGCGAATACGCCGaa                                                                          >  2:457286/1‑185 (MQ=255)                                                                                                                                                                                    aaGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTCGACGGCGTGGCGAAGGTCACCggg                                                                                                        >  1:2242/1‑149 (MQ=255)                                                                                                                                                                                                             ttGCGCGGGCATTGGATGACGCGGCGCGCGgcgccgcgtcatccaatgcccgcacaattgcacgttgggcgagcgtgaccttgaagccg                                                                                                                                           >  1:100835‑M2/1‑30 (MQ=255)                                                                                                                                                                                                                   gggCATTGGATGACGCGGCGCGCGgcgccgcatcatccaatgcccgcacaattgcacgttgggcgagcgtgaccttgaagccgttgtggctca                                                                                                                                 >  2:202401‑M2/1‑24 (MQ=255)                                                                                                                                                                                                                   gggCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCAGGCGCGTTACGCGGGCGAATACCCCGAAGTGGGCCTGCTCCATGGCCGCGCCGTGTCCAGTACCATCGCCCGAGGTCGGGTACTCAACATCGACAGTACg  >  1:56799/1‑220 (MQ=255)                                                                                                                                                                                                                     gCATTGGATGCCGCCGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACg                                                                                                                            <  2:61397/96‑1 (MQ=255)                                                                                                                                                                                                                                      gcgcggcgcCGCGGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCAGGCGCGTTACGCGGGCGAATACCCCGAAGTGGGCCTGCTCCATGGCAGcgtc                                                  <  2:73648/153‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                     GCTTCGATGGCCAGGTGATCCGGCAAGCTCGCCTGGCGCTGGGCGGCGTTGCTCACAAGCCGTGGCGAGACCCGGTTGTGGAGCGCATGCTGGCCGGCCAGGCGCCTTGCGAAGCGCTGTTCACCCGGGCTGCAAAAACGTTGCTGCAAGGTGCAAAACCTCTGAGCCACAACGGCTTCAAGGTCACGCTCGCCCAACGTGCAATTGTGCGGGCATTGGATGACGCGGCGCGCGGCGCCGCTGACGGGGGGCCACGACCATGATCAAACCCACACCGGTAGCCGGTACGTCCCTGGACCGCGTAGACGGCGTGGCGAAGGTCACCGGGCAGGCGCGTTACGCGGGCGAATACCCCGAAGTGGGCCTGCTCCATGGCAGCGTCGTGTCCAGTACCATCGCCCGAGGTCGGGTACTCAACATCGACAGTACG  >  AE015451/3744456‑3744885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.