New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4160673 = | 10 (0.390) | 3 (0.120) | 3/310 | NT | 16.3% | intergenic (+39/+82) | PP_3662/PP_3663 | conserved protein of unknown function/GGDEF domain protein |
? | AE015451 | 4160817 = | 21 (0.840) | coding (1240/1302 nt) | PP_3663 | GGDEF domain protein |
TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4160708‑4160673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > AE015451/4160817‑4161033 TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCC > 1:205416/1‑80 TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCC < 2:205412/80‑1 GTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > 1:48005/1‑236 CCGCGTTTGGACTGGGACAACGCCACATCCCCCGGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGG < 2:33926/130‑1 TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4160708‑4160673 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > AE015451/4160817‑4161033 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |