| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4160673 = | 10 (0.390) | 3 (0.120) | 3/310 | NT | 16.3% | intergenic (+39/+82) | PP_3662/PP_3663 | conserved protein of unknown function/GGDEF domain protein |
| ? | AE015451 | 4160817 = | 21 (0.840) | coding (1240/1302 nt) | PP_3663 | GGDEF domain protein | |||||
TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4160708‑4160673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > AE015451/4160817‑4161033 TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCC > 1:205416/1‑80TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCC < 2:205412/80‑1 GTCACCCGGCCCCCGCGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > 1:48005/1‑236 CCGCGTTTGGACTGGGACAACGCCACATCCCCCGGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGG < 2:33926/130‑1 TCCGTACAGACGCTCCCGTCACCCGGCCCCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4160708‑4160673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGACGAACTCATCCCCGCC > AE015451/4160817‑4161033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |