New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4160673 =	10 (0.390)	3 (0.120)	3/310	NT	16.3%	intergenic (+39/+82)	PP_3662/PP_3663	conserved protein of unknown function/GGDEF domain protein
	?	AE015451	4160817 =	21 (0.840)					coding (1240/1302 nt)	PP_3663	GGDEF domain protein

TCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACA  >  AE015451/4160453‑4160885                                                                                                                                                                                                                             |                                                                                                                                                                                                                     tCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACGCGGGCCGTATCAGATCCACGGTGACAGCGCCATACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCggggg                                                                                                                                                                                                             <  1:485964/230‑1 (MQ=255)    ggcggggatgagttcgtcatcttgctcagtggcgcgagcagtgaacgggtcatggaactggggagtgggctgcgtgagcagttccagcagtacgccgacaagactgtgcctacgccccaggcggttaccttgagcattggtgccaacgtgttcgatcagccgccggcgagcctggcggcgttgatcgagcagggggatgtggcgttgtaccagtccaAACGCGGGGGCCGGGTGAc                                                                                                                                                                                                    >  1:48005‑M1/218‑236 (MQ=255)                               gCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAAcgc                                                                                                                                                                                                                  >  1:293736/1‑195 (MQ=255)                                                       aTCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACgg                                                                                                                                                                                    <  1:45269/201‑1 (MQ=255)                                                                                                  ccgacaagactgtgcctacgccccaggcggttaccttgagcattggtgccaacgtgttcgatcagccgccggcgagcctggcggcgttgatcgagccgggggatgtggcgttgtcccagtccaAACGCgg                                                                                                                                                                                                                <  2:33926‑M1/7‑1 (MQ=255)                                                                                                                                 aTGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGc                                                                                                                              <  1:278000/181‑1 (MQ=255)                                                                                                                                                               ccGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTa                                                             <  1:396045/216‑1 (MQ=255)                                                                                                                                                                    cTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGa                                                                                             >  2:320787/1‑179 (MQ=255)                                                                                                                                                                                 ggcggcgttgatcgagcagggggatgtggcgttgtaccagtccaAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGa                                                                                                                                                                                   >  1:205416‑M1/45‑80 (MQ=255)                                                                                                                                                                                 ggcggcgttgatcgagcagggggatgtggcgttgtaccagtccaAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGa                                                                                                                                                                                   <  2:205412‑M1/36‑1 (MQ=255)                                                                                                                                                                                              ctTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTg                                                                     >  1:439858/1‑177 (MQ=255)                                                                                                                                                                                              ctTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTg                                                                     <  2:439854/177‑1 (MQ=255)                                                                                                                                                                                                         aCGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAaca  >  2:168529/1‑233 (MQ=255)                                                                                                                                                                                                                    tGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACa                                                           <  2:165126/165‑1 (MQ=255)                                                                                                                                                                                                                       ccGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGcc                                                                                <  1:14817/141‑1 (MQ=255)                                                                                                                                                                                                                          tCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAg                         >  2:507976/1‑193 (MQ=255)                                                                                                                                                                                                                           cGAACGCGGGGGCCGGGTGACGGGAGCGGCTGTACGGATCACCCACATGGGTTACATGAAAGCTc                                                                                                                                                        >  2:95164/1‑65 (MQ=255)                                                                                                                                                                                                                            gAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTg                                           >  2:443945/1‑173 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                     TCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACA  >  AE015451/4160453‑4160885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.