New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6041683 =	31 (1.200)	3 (0.120)	3/302	NT	10.4%	coding (241/723 nt)	rph	Ribonuclease PH
	?	AE015451	6041753 =	22 (0.900)					coding (171/723 nt)	rph	Ribonuclease PH

GAAACGTCCAAGTGGTCGCGTTGCCGATCAGCTCCGCTCGATCCGCATCACCCGCAACTACACCAAGCACGCCGAAGGGTCGGTACTGGTCGAGTTCGGTGACACCAAAGTCATCTGCACGGTCAGCGTTGAAAACGGTGTACCGCGCTTCCTCAAAGGCCAGGGCCAAGGCTGGCTGACCGCCGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6041921‑6041683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagccTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGAA  >  AE015451/6041753‑6041985                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAACGTCCAAGTGGTCGCGTTGCCGATCAGCTCCGCTCGATCCGCATCACCCGCAACTACACCAAGCACGCCGAAGGGTCGGTACTGGTCGAGTTCGGTGACACCAAAGTCATCTGCACGGTCAGCGTTGAAAACGGTGTACCGCGCTTCCTCGAAGGCCAGGGCCAAGGCTGGCTGACCGCCGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCA                                                                                                                                                                                                                                              >  1:25020/1‑236                    GTTGCCGATCAGCTCCGCTCGATCCGCATCACCCGCAACTACACCAAGCACGCCGAAGGGTCGGTACTGGTCGAGTTCGGTGACACCAAAGTCATCTGCACGGTCAGCGTTGAAAACGGTGTACCGCGCTTCCTCAAAGGCCAGGGCCAAGGCTGGCTGACCGCCGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAG                                                                                                                                                                                                                                             >  1:96013/1‑218                                                                                                                                                                                        CGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTT                                                                                                                                  <  1:148655/161‑1                                                                                                                                                                                        CGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTT                                                                                                                                  >  2:148651/1‑161                                                                                                                                                                                                                           GTAACCAGCGCGAAGCCAGCCGTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTCGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGCCCACTTGGACGTGTCAGCTGCGATACC                                                      >  2:254208/1‑202                                                                                                                                                                                                                                        AGCCAGCCGTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCG       >  1:252408/1‑236                                                                                                                                                                                                                                              CCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGAA  <  1:472608/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAACGTCCAAGTGGTCGCGTTGCCGATCAGCTCCGCTCGATCCGCATCACCCGCAACTACACCAAGCACGCCGAAGGGTCGGTACTGGTCGAGTTCGGTGACACCAAAGTCATCTGCACGGTCAGCGTTGAAAACGGTGTACCGCGCTTCCTCAAAGGCCAGGGCCAAGGCTGGCTGACCGCCGAGTATGGCATGCTGCCGCGCTCCACCGGCGAACGTAACCAGCGCGAAGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6041921‑6041683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagccTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGAA  >  AE015451/6041753‑6041985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.