New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6041683 =	31 (1.200)	3 (0.120)	3/302	NT	10.4%	coding (241/723 nt)	rph	Ribonuclease PH
	?	AE015451	6041753 =	22 (0.900)					coding (171/723 nt)	rph	Ribonuclease PH

GATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGAA  >  AE015451/6041531‑6041985                                                                                                                                                                                                                               |                                                                                                                                                                                                                                         gATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCtt                                                                                                                                                                                                                             >  1:271484/1‑236 (MQ=255)     gACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAg                                                                                                                                                                                                                         <  1:354450/236‑1 (MQ=255)             aCGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTg                                                                                                                                                                                                                           >  2:226928/1‑226 (MQ=255)                         aTCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGcc                                                                                                                                                                                                                                     >  2:131059/1‑204 (MQ=255)                                    tCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGAcc                                                                                                                                                                                          <  1:413611/236‑1 (MQ=255)                                                                gTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGaa                                                                                                                                                                >  2:472604/1‑234 (MQ=255)                                                                       aGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAg                                                                                                                                                       >  2:419943/1‑236 (MQ=255)                                                                               cATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGcgcg                                                                                                                                                                                                                 >  1:93923/1‑170 (MQ=255)                                                                                    ccAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTc                                                                                                                                           <  1:318163/235‑1 (MQ=255)                                                                                         gcggcgcgCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGc                                                                                                                                        <  2:271480/233‑1 (MQ=255)                                                                                         gcggcgcgCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGt                                                                                                                                      <  1:170996/235‑1 (MQ=255)                                                                                                                 aGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGGGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCGTCTGCGGAAGCGCgg                                                                                                                                                                                                                >  1:65429/1‑137 (MQ=255)                                                                                                                        ggATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCg                                                                                                             >  1:260263/1‑229 (MQ=255)                                                                                                                                aGGGGGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACGCGGCGGTCAGCCAGCCTTGGCCCTGGCCt                                                                                                                                                                                                                              >  2:123144/1‑108 (MQ=255)                                                                                                                                             ccTGCTTGCCACGGCTCGCTTCGCGCTGGTTCCGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTc                                                                                                                                           <  1:64598/178‑1 (MQ=255)                                                                                                                                                     ccACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGcc                                                                                                                                                                                                                                     <  2:31333/80‑1 (MQ=255)                                                                                                                                                      cACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGa                                                                        <  1:419947/236‑1 (MQ=255)                                                                                                                                                           CTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAAc                                                                                     >  1:96013‑M1/1‑218 (MQ=255)                                                                                                                                                            TGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTCGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTc                                                                  >  1:25020‑M1/1‑236 (MQ=255)                                                                                                                                                                       cgagtatggcatgctgccgcgctccaccggcgaacgtaaccagcgcgaagccagccTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCtt                                                                                                                                  <  1:148655‑M2/105‑1 (MQ=255)                                                                                                                                                                       cgagtatggcatgctgccgcgctccaccggcgaacgtaaccagcgcgaagccagccTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCtt                                                                                                                                  >  2:148651‑M2/57‑161 (MQ=255)                                                                                                                                                                                          aGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAAt                                    <  1:505009/236‑1 (MQ=255)                                                                                                                                                                                                    caTGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCt                                  <  1:385683/228‑1 (MQ=255)                                                                                                                                                                                                         cATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATc                                                                                           <  1:517871/166‑1 (MQ=255)                                                                                                                                                                                                          gtaaccagcgcgaagccagccGTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTCGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGCCCACTTGGACGTGTCAGCTGCGATAcc                                                      >  2:254208‑M2/22‑202 (MQ=255)                                                                                                                                                                                                              tCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGc                 <  1:322670/235‑1 (MQ=255)                                                                                                                                                                                                              gcggcggTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTg                                                                                              <  2:291679/157‑1 (MQ=255)                                                                                                                                                                                                                   ggTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCCACGCTGACCGTGCAGCTGACTTTGGTGTCACCGACCTCGACCAGTACCGACCCTTCGGCGt                                                                                                                                      >  2:76381/1‑113 (MQ=255)                                                                                                                                                                                                                   ggTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAg                                                                                                                                                       <  2:155418/96‑1 (MQ=255)                                                                                                                                                                                                                       agccagccGTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCg       >  1:252408‑M2/9‑236 (MQ=255)                                                                                                                                                                                                                             ccTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGaa  <  1:472608‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                         GATGGACGCGGTACGGGTACCGCCATCGGCCTGGATCACGTCGCAATCGACGTACAGGGTGATGTCACCGAGCTTGCTCATGTCCAGCGCGGCGCGCAGCGAACGGCCGATCAGGCGCTGGATTTCCAGGGTGCGGCCACCCTGCTTGCCACGGCTGGCTTCGCGCTGGTTACGTTCGCCGGTGGAGCGCGGCAGCATGCCATACTCGGCGGTCAGCCAGCCTTGGCCCTGGCCTTTGAGGAAGCGCGGTACACCGTTTTCAACGCTGACCGTGCAGATGACTTTGGTGTCACCGAACTCGACCAGTACCGACCCTTCGGCGTGCTTGGTGTAGTTGCGGGTGATGCGGATCGAGCGGAGCTGATCGGCAACGCGACCACTTGGACGTTTCATCTGGGATACCTGTACTGGGACTTTGAATCTGCCGAGCATTATAGAGCCCGCAGCCCGGGGAA  >  AE015451/6041531‑6041985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.