New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 516759	26 (1.010)	3 (0.120)	3/306	NT	9.8%	coding (233/783 nt)	PP_0429	Oxidoreductase, short chain dehydrogenase/reductase family
	?	AE015451	= 516797	30 (1.210)					coding (195/783 nt)	PP_0429	Oxidoreductase, short chain dehydrogenase/reductase family

CATAGGCGGCCATCCATGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTGGAAGCACCAGTGATCATGGCGTAACGGGTCA  >  AE015451/516535‑516990                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                        cATAGGCGGCCATCCATGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCttcttc                                                                                                                                                                                                                               >  1:474069/1‑235 (MQ=255)           catccatGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCa                                                                                                                                                                                                                    <  1:145746/236‑1 (MQ=255)                           gcCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGgcg                                                                                                                                                                                                    >  1:136650/1‑236 (MQ=255)                                 ccGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCagcgg                                                                                                                                                                                              <  1:126876‑M2/236‑6 (MQ=255)                                 ccGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCagcg                                                                                                                                                                                               <  1:24605‑M2/235‑5 (MQ=255)                                                                            cAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCCGCAAATCGATACGCCGCTCGCCTTCTTCCAg                                                                                                                                                                                                                            >  2:400900/1‑163 (MQ=255)                                                                                  tCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTgg                                                                                                                                             >  1:184590/1‑236 (MQ=255)                                                                                     ggTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGt                                                                                                                                           >  1:154642/1‑235 (MQ=255)                                                                                      gTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTgcgcctttcaggcttcgtgctagagctggaagaaggc                                                                                                                                                                                                    <  2:332994‑M1/177‑38 (MQ=255)                                                                                       ttACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGa                                                                                                                                                     >  2:331726/1‑223 (MQ=255)                                                                                       ttACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAg                                                                                                                                        >  1:133468/1‑236 (MQ=255)                                                                                                   tggcaCAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAAc                                                                                                                                                  >  1:210984/1‑214 (MQ=255)                                                                                                      cccaGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCa                                                                                                                                                                                                                    <  1:83094/143‑1 (MQ=255)                                                                                                               cTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTgcgcctttcaggcttcgtgctagagctggaagaaggcgagcggcgtatcg                                                                                                                                                                                       >  2:396367‑M1/1‑115 (MQ=255)                                                                                                               cTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTgcgcctttcaggcttcgtgctagagctggaagaaggcgagcggcgtatcg                                                                                                                                                                                       <  1:396371‑M1/165‑51 (MQ=255)                                                                                                                         gCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGc                                                                                                                        <  1:234689/218‑1 (MQ=255)                                                                                                                                       agcagATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCa                                                                                                                                         >  1:186440/1‑187 (MQ=255)                                                                                                                                                  ttCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGc                                                                                                 <  2:482031/216‑1 (MQ=255)                                                                                                                                                             aTTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCcgcg                                                                                                                 >  2:388928/1‑189 (MQ=255)                                                                                                                                                             aTTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGc                                                                   >  1:279226/1‑235 (MQ=255)                                                                                                                                                               tCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCGCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGGCCGCTCGAt                                                                                                                                  >  2:510970/1‑170 (MQ=255)                                                                                                                                                                  tGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAgcg                                                              <  1:253692/235‑1 (MQ=255)                                                                                                                                                                  tGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAAGCGATACGCCGCTCGCCTTCTTCCAGCTCGAGCa                                                                                                                                                                                                                    <  2:15404/85‑1 (MQ=255)                                                                                                                                                                                          cgcAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCcaggcccaggcc                                     <  1:289418/236‑1 (MQ=255)                                                                                                                                                                                             aaGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGccaggcccaggc                                      >  2:183126/1‑232 (MQ=255)                                                                                                                                                                                             aaGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGc                                   <  1:394156/235‑1 (MQ=255)                                                                                                                                                                                             aaGCCCGCGCAGTTGACAAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGc                                                                   >  2:282733/1‑203 (MQ=255)                                                                                                                                                                                               gCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTgg                                <  1:183130/236‑1 (MQ=255)                                                                                                                                                                                                      cAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCGTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGc                                                                                                 <  2:2154/164‑1 (MQ=255)                                                                                                                                                                                                                      cGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCagcggcgtatcgatttgctggtcaactgcgcgggcttgcgcacctatgggccgttcctggcccatgaatgggccgacgaacaggatctgctggaagtcaacgtgctggccctgag                                                                                <  1:396371‑M2/165‑116 (MQ=255)                                                                                                                                                                                                                      cGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCagcggcgtatcgatttgctggtcaactgcgcgggcttgcgcacctatgggccgttcctggcccatgaatgggccgacgaacaggatctgctggaagtcaacgtgctggccctgag                                                                                >  2:396367‑M2/1‑50 (MQ=255)                                                                                                                                                                                                                          aCGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTGGAAGCACCAGTGATc                  <  1:46634/223‑1 (MQ=255)                                                                                                                                                                                                                           cgccgcTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTGGAAGCACCa                        >  1:514852/1‑216 (MQ=255)                                                                                                                                                                                                                             ccgcTgcgcctttcaggcttcgtgctagagctggaagaaggcgagcggcgtatcgatttgctggtcaactgcgcgggcttgcgcacctatgggccgttcctggcccatgaatgggccgacgaacaggatctgctggaagtcaacgtgctggccctgagccgcctgtgccatgccatcggtaacctgatggctgtacagggtggcgggcagattctcaacgtcgccggcctggccgg  <  1:126876‑M1/236‑232 (MQ=255)                                                                                                                                                                                                                              cgcTgcgcctttcaggcttcgtgctagagctggaagaaggcgagcggcgtatcgatttgctggtcaactgcgcgggcttgcgcacctatgggccgttcctggcccatgaatgggccgacgaacaggatctgctggaagtcaacgtgctggccctgagccgcctgtgccatgccatcggtaacctgatggctgtacagggtggcgggcagattctcaacgtcgccggcctggccgg  <  1:24605‑M1/235‑232 (MQ=255)                                                                                                                                                                                                                                 tCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTGGCAGCACCCGTGacc                  >  1:79999/1‑214 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                        CATAGGCGGCCATCCATGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGACGCCGAAACGCTGGGTCAGCTCGATGGCAACAGGCTCCAGCGTTTCTCGTTGGCGTGCCACCAGGATCAGATTGCGCCCGCGCCGTGCCAGCGCTTCCGCCAAGGCCAGGCCCAGGCCGCTGGAAGCACCAGTGATCATGGCGTAACGGGTCA  >  AE015451/516535‑516990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.