New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	786616 =	34 (1.320)	3 (0.130)	3/290	NT	8.8%	intergenic (+38/‑267)	PP_0673/ettA	conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation
	?	AE015451	786676 =	31 (1.320)					intergenic (+98/‑207)	PP_0673/ettA	conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation

GGCGGCCAAGCCGGCAGCCAAGGTGGTCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTT  >  AE015451/786392‑786791                                                                                                                                                                                                                                 |                                                                                                                                                                                ggcggcCAAGCCGGCAGCCAAGGTGGTCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCca                                                                                                                                                                       <  1:372038/235‑1 (MQ=255)            agccaaaaccaagccctctaatcagataggtaaagacatcgccgatcgccccggcacgcggtggccagtgggatgtgtttacggggtgtcattgaacaaagtcgaccattctacgccaacgcgcggcgttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGcc                                                                                                                                                                               <  1:445596‑M1/3‑1 (MQ=255)                   cAAGGTGGTCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGAttcttc                                                                                                                                                    <  1:340814/236‑1 (MQ=255)                       gtggtCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGAttcttc                                                                                                                                                    <  2:489394/232‑1 (MQ=255)                       gtggtCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAgg                                                                                                                                                 <  1:124312/235‑1 (MQ=255)                                  cgcgcCTGCACCTGGCAAACCGGCCAAGTCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAg                                                                                                                                                  <  1:236277/222‑1 (MQ=255)                                          cACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGAttc                                                                                                                                                       <  2:261817/210‑1 (MQ=255)                                           aCCTGGCAAACCGGCCAAGGCGGCCGAGCAGCACCCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                                                                               <  2:129206/233‑1 (MQ=255)                                                  aaaCCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTgtggtg                                                                                                                                       >  1:216962/1‑218 (MQ=255)                                                  aaaCCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGc                                                                                                                      <  1:235701/235‑1 (MQ=255)                                                          cgccccggcacgcggtggccagtgggatgtgtttacggggtgtcattgaacaaagtcgaccattctacgccaacgcgcggcgttgcgtaggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcttcttcgcgggcatGCCCGCTcc                                                                                                                                                                         >  2:503589‑M1/168‑176 (MQ=255)                                                          cAAGGCGGCCGAGCCGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTgtgg                                                                                                                                         <  1:431561/208‑1 (MQ=255)                                                              gcggcCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAag                                                                                                          <  1:450248/235‑1 (MQ=255)                                                                                                    tcattgaacaaagtcgaccattctacgccaacgcgcggcgttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGCCCGCTCCCACAGGAATCGCGGATTTTTCAGGct                                                                                                                                               <  1:7941‑M1/35‑1 (MQ=255)                                                                                                           gccGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTACCGCGTGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATGGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGAcc                                                                       <  1:483347/224‑1 (MQ=255)                                                                                                                cTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCcg                                                                                                               >  1:181163/1‑180 (MQ=255)                                                                                                                 tGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGTCCGCTCCCACAGGAATCGCGGAttc                                                                                                                                                       >  2:238377/1‑139 (MQ=255)                                                                                                                 tGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGTCCGCTCCCACAGGAATCGCGGAttc                                                                                                                                                       <  1:238381/139‑1 (MQ=255)                                                                                                                 tGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCcca                                                      <  1:321262/236‑1 (MQ=255)                                                                                                                          cgcCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGa                                                                                                            >  2:461200/1‑173 (MQ=255)                                                                                                                                       ggggCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCGTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                                                                               <  2:486788/140‑1 (MQ=255)                                                                                                                                              ccGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTa                                      >  1:272907/1‑223 (MQ=255)                                                                                                                                              ccGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCcgcg                          <  1:321879/235‑1 (MQ=255)                                                                                                                                                    ccgccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGGGACGCTGTGGGATCGGGCATGCCCGCGTAGAGGCCgg                                                                                                   >  1:434205/1‑156 (MQ=255)                                                                                                                                                        cggCCGGGGGGCAAGGCCAAACAGCGTCCCGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtg                                                                                                                                 <  2:84889/120‑1 (MQ=255)                                                                                                                                                         tGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCcgcg                          <  1:493352/224‑1 (MQ=255)                                                                                                                                                          ccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCGAGCCCGCGaa                                                                                                           >  2:299442‑M1/72‑142 (MQ=255)                                                                                                                                                          ccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCGAGCCCGCGaa                                                                                                           <  1:299446‑M1/71‑1 (MQ=255)                                                                                                                                                                                 gTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACttt  <  1:229316/224‑1 (MQ=255)                                                                                                                                                                                   cACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAAt            <  1:346947/212‑1 (MQ=255)                                                                                                                                                                                    aCGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCtgt                                                                                                                                           >  2:168340/1‑84 (MQ=255)                                                                                                                                                                                    aCGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCtgt                                                                                                                                           <  1:168344/84‑1 (MQ=255)                                                                                                                                                                                    aCGTCGGAGTCTCTTCGGCGGCTGTGCCGGCCCGTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAg                                                                            <  2:357565/147‑1 (MQ=255)                                                                                                                                                                                             tctcTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACGGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACttt  >  2:250997/1‑212 (MQ=255)                                                                                                                                                                                                 ttCGGCTGCTGTGCCGGCTCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                                                                               <  2:41633/83‑1 (MQ=255)                                                                                                                                                                                                 ttCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACt    <  1:430119/206‑1 (MQ=255)                                                                                                                                                                                                  tCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTC‑GTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATc                                                 <  2:507110/159‑1 (MQ=255)                                                                                                                                                                                                     gctgctGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTGCAGGCGCTGTGGTGACGCTGTGGGAg                                                                                                                           >  1:315868/1‑83 (MQ=255)                                                                                                                                                                                                                      ttCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAAcgccgc                           >  1:511678/1‑162 (MQ=255)                                                                                                                                                                                                                            ggCTCGCCCGCTCCCGCAGTAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGc                                                                                                                          <  1:205645/61‑1 (MQ=255)                                                                                                                                                                                                                            ggCTCGCCCGCTCCCACAGGAATCGCGGATTCGTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGACCACACCcca                                                      <  2:330201/129‑1 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                GGCGGCCAAGCCGGCAGCCAAGGTGGTCAGCACTGCGCCTGCACCTGGCAAACCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTT  >  AE015451/786392‑786791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.