New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	786616 =	34 (1.320)	3 (0.130)	3/290	NT	8.8%	intergenic (+38/‑267)	PP_0673/ettA	conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation
	?	AE015451	786676 =	31 (1.320)					intergenic (+98/‑207)	PP_0673/ettA	conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation

GCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCTCAA  >  AE015451/786453‑786891                                                                                                                                                                                                                                |                                                                                                                                                                                                                        gcggcCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAag                                                                                                                                                                                                              <  1:450248/235‑1 (MQ=255)                                              gccGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTACCGCGTGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATGGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGAcc                                                                                                                                                                           <  1:483347/224‑1 (MQ=255)                                                   cTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCcg                                                                                                                                                                                                                   >  1:181163/1‑180 (MQ=255)                                                    tGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCcca                                                                                                                                                          <  1:321262/236‑1 (MQ=255)                                                             cgcCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGa                                                                                                                                                                                                                >  2:461200/1‑173 (MQ=255)                                                                                 ccGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTa                                                                                                                                          >  1:272907/1‑223 (MQ=255)                                                                                 ccGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCcgcg                                                                                                                              <  1:321879/235‑1 (MQ=255)                                                                                       ccgccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGGGACGCTGTGGGATCGGGCATGCCCGCGTAGAGGCCgg                                                                                                                                                                                                       >  1:434205/1‑156 (MQ=255)                                                                                            tGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCcgcg                                                                                                                              <  1:493352/224‑1 (MQ=255)                                                                                             ccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCGAGCCCGCGaa                                                                                                                                                                                                               >  2:299442‑M1/72‑142 (MQ=255)                                                                                             ccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcctgtgccggcctcttcgcgggcatGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCGAGCCCGCGaa                                                                                                                                                                                                               <  1:299446‑M1/71‑1 (MQ=255)                                                                                                                    gTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACttt                                                                                                      <  1:229316/224‑1 (MQ=255)                                                                                                                      cACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAAt                                                                                                                <  1:346947/212‑1 (MQ=255)                                                                                                                       aCGTCGGAGTCTCTTCGGCGGCTGTGCCGGCCCGTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAg                                                                                                                                                                                <  2:357565/147‑1 (MQ=255)                                                                                                                                tctcTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACGGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACttt                                                                                                      >  2:250997/1‑212 (MQ=255)                                                                                                                                    ttCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACt                                                                                                        <  1:430119/206‑1 (MQ=255)                                                                                                                                     tCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTC‑GTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATc                                                                                                                                                     <  2:507110/159‑1 (MQ=255)                                                                                                                                                         ttcgcgggctcgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCgg                                                                                                                                                   <  1:299446‑M2/71‑1 (MQ=255)                                                                                                                                                         ttcgcgggctcgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCgg                                                                                                                                                   >  2:299442‑M2/72‑142 (MQ=255)                                                                                                                                                         ttCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAAcgccgc                                                                                                                               >  1:511678/1‑162 (MQ=255)                                                                                                                                                               ggCTCGCCCGCTCCCACAGGAATCGCGGATTCGTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGACCACACCcca                                                                                                                                                          <  2:330201/129‑1 (MQ=255)                                                                                                                                                                             CACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCgg                                                                                                                                                   <  2:303185‑M1/122‑1 (MQ=255)                                                                                                                                                                             CACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCgg                                                                                                                                                   >  1:303189‑M1/1‑122 (MQ=255)                                                                                                                                                                                AGGAATCGCGGATTCTTAAGGCTCTGTGGTGACGCTGTGGGAGCGCGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATc                                                                                                                                                     >  2:182042‑M1/1‑117 (MQ=255)                                                                                                                                                                                      cgcgGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCcgcg                                                                                                                              <  2:406515/134‑1 (MQ=255)                                                                                                                                                                                       gcgGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGc                                                    >  2:155510/1‑207 (MQ=255)                                                                                                                                                                                         ggATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTg                           >  1:213378/1‑230 (MQ=255)                                                                                                                                                                                             agcctgaaaaatccgcgattcctgtgggagcgggcATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGa                                                                                             <  1:7941‑M2/125‑1 (MQ=255)                                                                                                                                                                                                  aGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCg                                                                                      <  1:464841/162‑1 (MQ=255)                                                                                                                                                                                                          tggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAACCACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCt     <  1:461204/235‑1 (MQ=255)                                                                                                                                                                                                          tggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATc                                                <  1:503593/192‑1 (MQ=255)                                                                                                                                                                                                          tggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCt     <  1:155514/235‑1 (MQ=255)                                                                                                                                                                                                          tggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCt     <  1:487528/235‑1 (MQ=255)                                                                                                                                                                                                           ggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGa                                                                                                                  <  1:510443/125‑1 (MQ=255)                                                                                                                                                                                                           ggtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGa                                                                                                                  >  2:510439/1‑125 (MQ=255)                                                                                                                                                                                                            gtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCCGTGACCGCACTGATCACACCCCGCCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGaaa                                                                                           >  2:471850/1‑145 (MQ=255)                                                                                                                                                                                                            gtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCg                                               <  1:4845/191‑1 (MQ=255)                                                                                                                                                                                                            gtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGAt                                          >  2:386898/1‑196 (MQ=255)                                                                                                                                                                                                            gtgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCTCaa  >  1:434786/1‑236 (MQ=255)                                                                                                                                                                                                             tgACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTagag                    <  2:272903/217‑1 (MQ=255)                                                                                                                                                                                                                       ggagcgggcATGCCCGCGAAGAAGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTACGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCg                                                   >  2:503589‑M2/10‑176 (MQ=255)                                                                                                                                                                                                                             ggcATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCt     <  1:445596‑M2/213‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                        GCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCCCTCCTATGCAACGCCGCGCGTTGGCGTAGAATGGTCGACTTTGTTCAATGACACCCCGTAAACACATCCCACTGGCCACCGCGTGCCGGGGCGATCGGCGATGTCTTTACCTATCTGATTAGAGGGCTTGGTTTTGGCTCAA  >  AE015451/786453‑786891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.