New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1411412	21 (0.810)	4 (0.160)	4/300	NT	16.7%	coding (523/1437 nt)	PP_1232	conserved exported protein of unknown function
	?	AE015451	= 1411433	20 (0.820)					coding (502/1437 nt)	PP_1232	conserved exported protein of unknown function

TGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCA  >  AE015451/1411193‑1411641                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      tgtCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGcc                                                                                                                                                                                                                        <  1:351073/235‑1 (MQ=255)             gTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgcc                                                                                                                                                                                                               >  2:484256‑M2/1‑229 (MQ=255)                                 gtCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                         <  1:149641/234‑1 (MQ=255)                                    agcagGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGc                                                                                                                                                                                     >  1:219063/1‑235 (MQ=255)                                               cggcggTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgc                                                                                                                                                                                                                >  2:198088‑M2/1‑195 (MQ=255)                                                   ggTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcag                                                                                                                                                                              >  1:172781/1‑227 (MQ=255)                                                       tGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcagc                                                                                                                                                                             >  1:290437/1‑224 (MQ=255)                                                          cGTCATCGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCa                                                                                                                                                                                              <  1:41073/204‑1 (MQ=255)                                                                  cGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATc                                                                                                                                                                                                                  <  1:435046/176‑1 (MQ=255)                                                                                  ggCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcagc                                                                                                                                                                             >  2:419676/1‑197 (MQ=255)                                                                                           aCATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCatcatc                                                                                                                                                              <  1:245655/203‑1 (MQ=255)                                                                                                    gCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                         <  1:351357/167‑1 (MQ=255)                                                                                                    gCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                         >  2:351353/1‑167 (MQ=255)                                                                                                        gTTTCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggag                                                                                                                                                                                    >  1:215317‑M2/1‑138 (MQ=255)                                                                                                          tGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGt                                                                                                              <  1:435674/236‑1 (MQ=255)                                                                                                           gCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACAcccc                                                                                                                            <  1:336046/221‑1 (MQ=255)                                                                                                             gTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCa                                                                                                                                                    <  2:301748/195‑1 (MQ=255)                                                                                                                  tCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATGgccggc                                                                                                                                                                                                            <  2:254093‑M2/134‑7 (MQ=255)                                                                                                                       gCCGGCTTTTTCCAGGTTCCGGATACCGTTGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCgctgcgggcatcggcatgattgccggcacc                                                                                                                                                                                                         <  2:302874‑M1/132‑31 (MQ=255)                                                                                                                         cGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGc                                                                                                                                                                                 >  2:272884/1‑154 (MQ=255)                                                                                                                             tttttCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCt                                                                                                                                                                                                     <  2:515229/130‑1 (MQ=255)                                                                                                                                    aGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggagcaacggcgct                                                                                                                                                                          >  2:311818‑M2/1‑110 (MQ=255)                                                                                                                                                 cGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGcc                                                                                                                                                                                                                        <  2:300279/91‑1 (MQ=255)                                                                                                                                                      cGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTCACTCATGAATGGCCGCTGGCTGGGTGCAGGCgatgcaggcatcggcatgattgc                                                                                                                                                                                                                >  2:322837‑M1/1‑71 (MQ=255)                                                                                                                                                              ttCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCACCTGCATGCGCTGCTggg                                                                                                                                        >  1:64090/1‑158 (MQ=255)                                                                                                                                                                                     aGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCgatgcgggcatcggcatgattgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacct                                                                                                                         >  2:311818‑M1/1‑40 (MQ=255)                                                                                                                                                                                            ttGCTCCTGAATGGCCGCTGCCTGGGGGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCTCCTGCGGCCAGCACGATGACGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTgg                                                                                      <  1:64719/178‑1 (MQ=255)                                                                                                                                                                                               cTCCTGAATGGCCGCTGCCTGGGTGCCGGCgatgcgggcatcggcatgattgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacgatccacgaaac                                                                                             >  1:215317‑M1/1‑30 (MQ=255)                                                                                                                                                                                                               gCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCACCCGCaa                                                                                                                                                         >  2:96467/1‑92 (MQ=255)                                                                                                                                                                                                                  tGGGGGCCGGCAAGCATGCCGATGCCCGCATCGCCCGCACCCCCTGCGGcc                                                                                                                                                                                               >  2:112441/1‑51 (MQ=255)                                                                                                                                                                                                                    ggTGCCGGCAATCATGCCGATGCCCGCAGCgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcaacggtatccggaacctggaaaaagccggc                                                                                                            <  2:302874‑M2/132‑103 (MQ=255)                                                                                                                                                                                                                       gCCGGCcatgcgggcatcggcatgattgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacga                                                                                                       <  2:254093‑M1/134‑129 (MQ=255)                                                                                                                                                                                                                          ggCgatgcgggcatcggcatgattgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacgatccacgcaacatgccgaccatgttcgagcgcctggcacgccagtatcgctatgacgccaaaccgccggaattcctgctgacccacccggtgaccgaatcac  >  2:484256‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                           gCgatgcgggcatcggcatgattgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacgatccacgcaacatgccgaccatgttcgagcgcctggcacgccagtatcgctatgacgccaaaccgccg                                    >  2:198088‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                           gCAATCATGCCGATGCCTGCATCgcctgcacccagccagcggccattcatgagtgacggcgcttctcgcgccagaatgaacaggaagccgaccg                                                                                                                                           >  2:322837‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      TGTCGGCAATACGTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCA  >  AE015451/1411193‑1411641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.