New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1411412	21 (0.810)	4 (0.160)	4/300	NT	16.7%	coding (523/1437 nt)	PP_1232	conserved exported protein of unknown function
	?	AE015451	= 1411433	20 (0.820)					coding (502/1437 nt)	PP_1232	conserved exported protein of unknown function

GTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCAA  >  AE015451/1411205‑1411642                                                                                                                                                                                                                                     |                                                                                                                                                                                                                  gTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgcc                                                                                                                                                                                                                >  2:484256‑M2/1‑229 (MQ=255)                     gtCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                          <  1:149641/234‑1 (MQ=255)                        agcagGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGc                                                                                                                                                                                      >  1:219063/1‑235 (MQ=255)                                   cggcggTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgc                                                                                                                                                                                                                 >  2:198088‑M2/1‑195 (MQ=255)                                       ggTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcag                                                                                                                                                                               >  1:172781/1‑227 (MQ=255)                                           tGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcagc                                                                                                                                                                              >  1:290437/1‑224 (MQ=255)                                              cGTCATCGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCa                                                                                                                                                                                               <  1:41073/204‑1 (MQ=255)                                                      cGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATc                                                                                                                                                                                                                   <  1:435046/176‑1 (MQ=255)                                                                      ggCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCcagc                                                                                                                                                                              >  2:419676/1‑197 (MQ=255)                                                                               aCATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCatcatc                                                                                                                                                               <  1:245655/203‑1 (MQ=255)                                                                                        gCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                          >  2:351353/1‑167 (MQ=255)                                                                                        gCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                          <  1:351357/167‑1 (MQ=255)                                                                                            gTTTCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggag                                                                                                                                                                                     >  1:215317‑M2/1‑138 (MQ=255)                                                                                              tGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGt                                                                                                               <  1:435674/236‑1 (MQ=255)                                                                                               gCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACAcccc                                                                                                                             <  1:336046/221‑1 (MQ=255)                                                                                                 gTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCa                                                                                                                                                     <  2:301748/195‑1 (MQ=255)                                                                                                      tCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATGgccggc                                                                                                                                                                                                             <  2:254093‑M2/134‑7 (MQ=255)                                                                                                             cGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGc                                                                                                                                                                                  >  2:272884/1‑154 (MQ=255)                                                                                                                 tttttCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCt                                                                                                                                                                                                      <  2:515229/130‑1 (MQ=255)                                                                                                                        aGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggagcaacggcgct                                                                                                                                                                           >  2:311818‑M2/1‑110 (MQ=255)                                                                                                                                                  ttCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCACCTGCATGCGCTGCTggg                                                                                                                                         >  1:64090/1‑158 (MQ=255)                                                                                                                                                                                ttGCTCCTGAATGGCCGCTGCCTGGGGGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCTCCTGCGGCCAGCACGATGACGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTgg                                                                                       <  1:64719/178‑1 (MQ=255)                                                                                                                                                                                                   gCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCACCCGCaa                                                                                                                                                          >  2:96467/1‑92 (MQ=255)                                                                                                                                                                                                      tGGGGGCCGGCAAGCATGCCGATGCCCGCATCGCCCGCACCCCCTGCGGcc                                                                                                                                                                                                >  2:112441/1‑51 (MQ=255)                                                                                                                                                                                                        ggTGCCGGCAATCATGCCGATGCCCGCAGCgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcaacggtatccggaacctggaaaaagccggc                                                                                                             <  2:302874‑M2/132‑103 (MQ=255)                                                                                                                                                                                                               gCAATCATGCCGATGCCTGCATCgcctgcacccagccagcggccattcatgagtgacggcgcttctcgcgccagaatgaacaggaagccgaccg                                                                                                                                            >  2:322837‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                 aaTCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACCAGTGCGGCAGTTCGTGGGCCAGTa                                                                                >  2:291777/1‑152 (MQ=255)                                                                                                                                                                                                                         cGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTc                                                             <  2:148021/163‑1 (MQ=255)                                                                                                                                                                                                                              cccGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCCCCCGGGGCGGCaa  >  1:218528/1‑217 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                  GTGATTCGGTCACCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCAA  >  AE015451/1411205‑1411642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.