New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3398276 =	23 (0.890)	3 (0.120)	3/300	NT	12.3%	coding (757/819 nt)	PP_3002	shikimate dehydrogenase‑related enzyme
	?	AE015451	3398411 =	21 (0.860)					coding (69/438 nt)	aroQ‑III	3‑dehydroquinate dehydratase 3, type II

TCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGC  >  AE015451/3398087‑3398462                                                                                                                                                                                              |                                                                                                                                                                                           gcGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑GGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        <  1:26687/230‑1 (MQ=255)           aatgggtccaggcaccggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGaca                                                                                                                                                                       >  1:257727‑M1/180‑201 (MQ=255)             cgtaggccaaggccgccCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCAGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGa                                                                                                                                  >  1:247561/12‑236 (MQ=255)                       caccggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        >  1:176664‑M1/168‑236 (MQ=255)                        gccgccCCTGCCGGCTGATGTGCTGGGCGCGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        <  2:379410/235‑1 (MQ=255)                                     gCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCg                                                                                                                                                               >  2:463030/1‑183 (MQ=255)                                                         ggcCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCtt                                                                                                                                     >  1:189039/1‑189 (MQ=255)                                                                       ggCTGGCCTATGGCAAAGGCCTCACGCCTTTCCGGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        <  2:185414/187‑1 (MQ=255)                                                                             ccTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGAtgctg                                                                                                  >  2:457291/1‑204 (MQ=255)                                                                                 tGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATg                                                                                              <  2:257002/204‑1 (MQ=255)                                                                                         gCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCgggg                                                                                                                                                                                   <  2:299007/111‑1 (MQ=255)                                                                                         gCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCgggg                                                                                                                                                                                   >  1:299011/1‑111 (MQ=255)                                                                                                   ttaccggcgcCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGTCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATgg                                                                                             <  1:17026/181‑1 (MQ=255)                                                                                                         ctggaagctctcgacctgtgcccccagctcctcgcccagggcctgtaacgcctggtcgatgtcggccagggtcgctgtgccgtacTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATgg                                                                                             >  1:385785‑M1/86‑181 (MQ=255)                                                                                                                  ccgcgAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGAtgct                                                                                                   <  1:338866/165‑1 (MQ=255)                                                                                                                     cgggCAGGGCGAGGCGCGCCTGGCCGATGGCGTCGGCGTGCTGGTGGCGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCg                                                                                                                                                                               <  2:111929/84‑1 (MQ=255)                                                                                                                       aGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGTTCAATCAGCTGACGATTCCCTTGGAGTAGGTc                                                                                                                           >  2:93896/1‑137 (MQ=255)                                                                                                                       aGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATg                                                                                                             <  1:75415/151‑1 (MQ=255)                                                                                                                                    gcgcCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGAc                             >  1:10734/1‑218 (MQ=255)                                                                                                                                         tGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAg                                           >  2:284519/1‑199 (MQ=255)                                                                                                                                          ggCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATc                                                                                         <  1:157761/152‑1 (MQ=255)                                                                                                                                          ggCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATc                                                                                         >  2:157757/1‑152 (MQ=255)                                                                                                                                              gATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        <  2:67793/117‑1 (MQ=255)                                                                                                                                              gATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGAt                                                                                                                        >  1:67796/1‑117 (MQ=255)                                                                                                                                                  gCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGc  <  1:99902/231‑1 (MQ=255)                                                                                                                                                                                gggCGGTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTGGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTa                                                   <  2:117659/151‑1 (MQ=255)                                                                                                                                                                                              |                                                                                                                                                                                           TCGGCGAGCCTGACCGCGGACTTGCCGCCCCTGCCGGCTGATGTGCTGGGCGAGGCGGCCTTGGCCTACGAGCTGGCCTATGGCAAAGGCCTCACGCCTTTCCTGCGCCTGGCTCGCGAGCAGGGCCAGGCGCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGC  >  AE015451/3398087‑3398462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.