New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3398276 = | 23 (0.890) | 3 (0.120) | 3/300 | NT | 12.3% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
? | AE015451 | 3398411 = | 21 (0.860) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II |
GCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCG > AE015451/3398218‑3398605 | gcgcCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGAc > 1:10734/1‑218 (MQ=255) tGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAg > 2:284519/1‑199 (MQ=255) gCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGc < 1:99902/231‑1 (MQ=255) gggCGGTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTGGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTa < 2:117659/151‑1 (MQ=255) GGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGACCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTggg < 1:14671‑M1/197‑1 (MQ=255) cacGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatccatc < 1:457295/235‑1 (MQ=255) acGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGcc > 2:309038/1‑134 (MQ=255) acGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTcc > 2:207486/1‑195 (MQ=255) atcaatcaGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAg < 1:272945/235‑1 (MQ=255) ccatgcagcatcagtacattggcgaccatcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCag > 1:385785‑M2/97‑181 (MQ=255) gccTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAg < 1:280271/216‑1 (MQ=255) cTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCagag > 2:463853/1‑169 (MQ=255) cGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGGTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGGCATCGACCAGGCGTTACAGGCCCTGGGc > 2:113583/1‑122 (MQ=255) atcgacctactccaagggaatcgtcagctgattgatcaccgcacgtgtgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTg > 1:176664‑M2/70‑236 (MQ=255) cTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGcc < 2:247557/180‑1 (MQ=255) ctgcATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCCGGCCTATGAGGACCgg > 2:148040/1‑186 (MQ=255) ctgcATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGAGCTGATCGATGCCGGTg > 1:67174/1‑214 (MQ=255) cATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatccat < 1:321595/165‑1 (MQ=255) cATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatccat > 2:321591/1‑165 (MQ=255) cATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCt < 1:293477/57‑1 (MQ=255) cATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCt > 2:293473/1‑57 (MQ=255) caTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGc < 1:309042/211‑1 (MQ=255) aTGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCg > 1:196315/1‑221 (MQ=255) tgtcgggccgcaccccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCAtt > 1:257727‑M2/23‑201 (MQ=255) gCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCg > 1:86759/1‑183 (MQ=255) acgcgcGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGcatc < 2:135219/133‑1 (MQ=255) | GCGCCTGGCCGATGGCGTCGGCATGCTGGTGGAGCAGGCCGCCGAGGCGTTTGCCTGGTGGCGCGGGGTGCGGCCCGACACACGTGCGGTGATCAATCAGCTGACGATTCCCTTGGAGTAGGTCGATGGTCGCCAATGTACTGATGCTGCATGGCATCAACCACAACATGTTCGGCAAGCGCGACCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCG > AE015451/3398218‑3398605 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |