| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 3538215 | 38 (1.470) | 3 (0.120) | 3/302 | NT | 7.8% | coding (37/1116 nt) | PP_5587 | conserved protein of unknown function |
| ? | AE015451 | = 3538223 | 35 (1.430) | coding (45/1116 nt) | PP_5587 | conserved protein of unknown function | |||||
CTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGG > AE015451/3537999‑3538440 | cTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAATAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCAc < 1:262589/236‑1 (MQ=255) gcgGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCAc < 1:325119/196‑1 (MQ=255) cGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAAcc < 1:511796/236‑1 (MQ=255) tGGTGTCTGGGCGGGACATGTCCACCAACATCGAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc < 2:123129/203‑1 (MQ=255) tgtCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACCTTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCCAATTGGCAGTCTTCGGTGGTGGGACCGACAt > 1:64160/1‑195 (MQ=255) tgtCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCgggg > 1:314706/1‑236 (MQ=255) gCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTa > 2:512652/1‑181 (MQ=255) aCATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGtata < 1:512656/236‑1 (MQ=255) tCCAACGTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATGTAATGCCTCTTCTTAGAACAACTCGCCTTGCAACGGCAATATTGGTCTTGCCGTTCACGGACGCGGTACTGGCTGCAAATTTGCAGTCCACGGTGTTGGAAcc > 2:113846/1‑163 (MQ=255) cACCTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagagccattaaatgttcttattaaaggcaagatca < 2:470931‑M2/169‑65 (MQ=255) cAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatca > 1:470935‑M2/1‑105 (MQ=255) cTTCATGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGTCTCTTCTTAGAACAACTCGCATTGCAAAGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc < 1:115310/231‑1 (MQ=255) ttCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑cgc > 1:301194/1‑219 (MQ=255) aGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc < 2:439370/227‑1 (MQ=255) gCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAAgaccaagcttgccgttgcaatgcgagttgttctcagaagaggcattaaatgttcttattaaaggcaagatcaaggaacgaccagcgtaac > 1:373956‑M1/1‑88 (MQ=255) gCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGAtt > 1:397944/1‑235 (MQ=255) gtcGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATcgc < 1:33735/222‑1 (MQ=255) gttacGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTGAGAACAACTCGCATTGCAACGGCAAGCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatcaaggaacgaccagcgtatcgccagc > 1:373956‑M2/3‑90 (MQ=255) gCTGGTCGTTCCGTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑c < 2:434487/201‑1 (MQ=255) tGATCTTGCCTTTAATAAGAACATTTAATGGCTCTTCTTAGAACAACTCGCATTGCAACGGCAAgaccaagattgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatcaaggaacgaccagcgtatcgccagcctgaaggtg < 2:470931‑M1/169‑106 (MQ=255) tGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAAgaccaagattgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatcaaggaacgaccagcgtatcgccagcctgaagttg > 1:470935‑M1/1‑64 (MQ=255) cTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGGCTTGCCGTTCACGGAGGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGTTGGTACGGACATTCGTCGAAtt > 2:306161/1‑134 (MQ=255) aTGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcat > 1:86014/1‑236 (MQ=255) acagtctcAGAACACCTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcatgcat < 1:109194/232‑1 (MQ=255) tcttctTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACGTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATc > 1:369714/1‑236 (MQ=255) cctAGAACAACTCGCATTGCAACTGCAATCTGGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAAt > 2:457393/3‑106 (MQ=255) ttAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCTTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc > 1:40106/1‑164 (MQ=255) caacTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTTGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCg < 1:242637/236‑1 (MQ=255) aacTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCggg > 2:410427/1‑129 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACgt > 2:109190/1‑35 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTTGCAGTCTACGGTGGTGTTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACTTCGGGGGAAAAGGGTATAA‑cg > 2:339652/1‑140 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTc > 2:183264/1‑64 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTc < 1:183268/64‑1 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTCCCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc > 2:469361/1‑152 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGCCATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc < 1:469365/152‑1 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACCGCGCACTATTATAGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTggg > 1:6964/1‑206 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCTCACtat > 2:18235/1‑148 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGtt > 2:413835/1‑202 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcatgc > 1:285471/1‑216 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATctgct > 2:303248/1‑223 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGAt > 1:509832/1‑236 (MQ=255) gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGAATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGa > 1:62873/1‑235 (MQ=255) tGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACgg < 1:480912/236‑1 (MQ=255) gCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCtgctgc > 2:118938/1‑220 (MQ=255) | CTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGG > AE015451/3537999‑3538440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |