New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3538215	38 (1.470)	3 (0.120)	3/302	NT	7.8%	coding (37/1116 nt)	PP_5587	conserved protein of unknown function
	?	AE015451	= 3538223	35 (1.430)					coding (45/1116 nt)	PP_5587	conserved protein of unknown function

CTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGAC  >  AE015451/3537999‑3538454                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                         cTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAATAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCAc                                                                                                                                                                                                                               <  1:262589/236‑1 (MQ=255)                                         gcgGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCAc                                                                                                                                                                                                                               <  1:325119/196‑1 (MQ=255)                                                                        cGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAAcc                                                                                                                                                        <  1:511796/236‑1 (MQ=255)                                                                                         tGGTGTCTGGGCGGGACATGTCCACCAACATCGAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc                                                                                                                                                                        <  2:123129/203‑1 (MQ=255)                                                                                            tgtCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACCTTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCCAATTGGCAGTCTTCGGTGGTGGGACCGACAt                                                                                                                                                                             >  1:64160/1‑195 (MQ=255)                                                                                            tgtCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCgggg                                                                                                                                    >  1:314706/1‑236 (MQ=255)                                                                                                   gCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTa                                                                                                                                                                                    >  2:512652/1‑181 (MQ=255)                                                                                                        aCATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGtata                                                                                                                        <  1:512656/236‑1 (MQ=255)                                                                                                                       tCCAACGTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATGTAATGCCTCTTCTTAGAACAACTCGCCTTGCAACGGCAATATTGGTCTTGCCGTTCACGGACGCGGTACTGGCTGCAAATTTGCAGTCCACGGTGTTGGAAcc                                                                                                                                                                                  >  2:113846/1‑163 (MQ=255)                                                                                                                         cACCTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagagccattaaatgttcttattaaaggcaagatca                                                                                                                                                                          <  2:470931‑M2/169‑65 (MQ=255)                                                                                                                         cAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatca                                                                                                                                                                          >  1:470935‑M2/1‑105 (MQ=255)                                                                                                                            cTTCATGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGTCTCTTCTTAGAACAACTCGCATTGCAAAGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc                                                                                                        <  1:115310/231‑1 (MQ=255)                                                                                                                             ttCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑cgc                                                                                                                   >  1:301194/1‑219 (MQ=255)                                                                                                                                aGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc                                                                                                        <  2:439370/227‑1 (MQ=255)                                                                                                                                  gCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGAtt                                                                                              >  1:397944/1‑235 (MQ=255)                                                                                                                                     gtcGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATcgc                                                                                                      <  1:33735/222‑1 (MQ=255)                                                                                                                                        gttacGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTGAGAACAACTCGCATTGCAACGGCAAGCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttcttattaaaggcaagatcaaggaacgaccagcgtatcgccagc                                                                                                                                                  >  1:373956‑M2/3‑90 (MQ=255)                                                                                                                                             gCTGGTCGTTCCGTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑c                                                                                                                     <  2:434487/201‑1 (MQ=255)                                                                                                                                                                   cTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGGCTTGCCGTTCACGGAGGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGTTGGTACGGACATTCGTCGAAtt                                                                                                                                                                   >  2:306161/1‑134 (MQ=255)                                                                                                                                                                                     aTGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcat                                          >  1:86014/1‑236 (MQ=255)                                                                                                                                                                                         acagtctcAGAACACCTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcatgcat                                      <  1:109194/232‑1 (MQ=255)                                                                                                                                                                                          tcttctTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACGTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATc                                     >  1:369714/1‑236 (MQ=255)                                                                                                                                                                                              cctAGAACAACTCGCATTGCAACTGCAATCTGGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAAt                                                                                                                                                                    >  2:457393/3‑106 (MQ=255)                                                                                                                                                                                               ttAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCTTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc                                                                                                        >  1:40106/1‑164 (MQ=255)                                                                                                                                                                                                     caacTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTTGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCg                          <  1:242637/236‑1 (MQ=255)                                                                                                                                                                                                      aacTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCggg                                                                                                                                     >  2:410427/1‑129 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACgt                                                                                                                                                                                                                             >  2:109190/1‑35 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTTGCAGTCTACGGTGGTGTTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACTTCGGGGGAAAAGGGTATAA‑cg                                                                                                                    >  2:339652/1‑140 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTc                                                                                                                                                                                                 <  1:183268/64‑1 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTc                                                                                                                                                                                                 >  2:183264/1‑64 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTCCCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc                                                                                                        >  2:469361/1‑152 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGCCATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATc                                                                                                        <  1:469365/152‑1 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACCGCGCACTATTATAGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTggg                                                   >  1:6964/1‑206 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCTCACtat                                                                                                            >  2:18235/1‑148 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGtt                                                      >  2:413835/1‑202 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGgcatgc                                        >  1:285471/1‑216 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATctgct                                 >  2:303248/1‑223 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGAt                    >  1:509832/1‑236 (MQ=255)                                                                                                                                                                                                           gCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGAATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGa                     >  1:62873/1‑235 (MQ=255)                                                                                                                                                                                                               tGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACgg                <  1:480912/236‑1 (MQ=255)                                                                                                                                                                                                                gCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCtgctgc                               >  2:118938/1‑220 (MQ=255)                                                                                                                                                                                                                             tGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGAc  <  1:303252/236‑1 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                         CTGGACAAGTTTGCAGATGAAAGCGAAATCAAGGTGGTCCGCGGCACCGGTGCTTCCCAAAAGATCCTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAA‑CGCGCACTATTATCGCGCCGGATTACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGAC  >  AE015451/3537999‑3538454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.