New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3947913 =	23 (0.890)	3 (0.140)	3/262	NT	15.0%	coding (136/1797 nt)	PP_3483	putative Type II secretion system protein
	?	AE015451	3947998 =	15 (0.710)					coding (51/1797 nt)	PP_3483	putative Type II secretion system protein

GGGCCAAGGCCAGCTTGTCGAAGCGTGGGGTGCTGGCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCA  >  AE015451/3947700‑3948125                                                                                                                                                                                                                      |                                                                                                                                                                                                                     cccctgcagttgtacgatggaagctgggtgttggccgaccgccgccgtaacggcgccaagccaccagggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTcc                                                                                                                                                                                                 >  1:250978‑M1/214‑235 (MQ=255)                     aaGCGTGGGGTGCTGGCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTc                                                                                                                                                                              <  1:482058/234‑1 (MQ=255)                        cGTGGGGTGCTGGCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg                                                                                                                                                                          <  1:448983/235‑1 (MQ=255)                            tggttggccgaccgccgccgtaacggcgccaagccaccagggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCAt                                                                                                                                                                                                          >  2:394480‑M1/187‑199 (MQ=255)                               tGCTGGCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCCGGGCCAGGAGGTCGCGGGGGTAGGCGGGAATTTTTGCGGGGTTCTTCGCgg                                                                                                                                                                                                              >  2:418087/1‑192 (MQ=255)                                    gCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGccc                                                                                                                                                                                                      >  2:173794/1‑195 (MQ=255)                                     ccAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTa                                                                                                                                                                                         >  1:161425/1‑207 (MQ=255)                                       agcagGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGcc                                                                                                                                                                                                       >  1:376356/1‑191 (MQ=255)                                            gctgtggctgtCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAt                                                                                                                                                                                                          >  1:212060/1‑183 (MQ=255)                                                tggctgtCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGttct                                                                                                                                                                                                                    <  2:376352/169‑1 (MQ=255)                                                                   aaTGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGcc                                                                                                                                                                                                       >  1:318122/1‑163 (MQ=255)                                                                       cAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTAGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg                                                                                                                                                                          <  1:286178/188‑1 (MQ=255)                                                                        aGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGc                                                                                                                                                                                                        >  1:120719/1‑157 (MQ=255)                                                                                    aGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGccc                                                                                                                                         <  1:335274/208‑1 (MQ=255)                                                                                      gcgcCGGGTGAAGGTGTCGGGGGTGTCGCGGGCCAGGCGTTCCAGGCAGCCGGGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGc                                                                                                                                                                                                        <  2:145186/143‑1 (MQ=255)                                                                                             gTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAt                                                                                                                                                                                                          >  2:299535/1‑134 (MQ=255)                                                                                                aaGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca                                                                                                                                                                                  <  2:144210/155‑1 (MQ=255)                                                                                                         ggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                       >  1:376133/1‑173 (MQ=255)                                                                                                            cccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCcac                                                                                                                                                                                              <  2:373657‑M1/25‑1 (MQ=255)                                                                                                            cccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgt                                                                                                                                                         <  2:316081‑M1/62‑1 (MQ=255)                                                                                                               gcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCGCCca                                                                                                                                                                                               <  2:161421‑M1/24‑1 (MQ=255)                                                                                                                  cccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc                                                                                                                                                   >  1:316085‑M1/101‑168 (MQ=255)                                                                                                                              tCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                 <  1:173798/222‑1 (MQ=255)                                                                                                                                                  cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtgtg                                                                                                                                                        <  2:366764/131‑1 (MQ=255)                                                                                                                                                    cGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTACCACCGGTGCATCACCGGTCTGTGGGCTGCATCCATCCtgtcg                                                                                                                                                       >  1:397092/1‑128 (MQ=255)                                                                                                                                                        agtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGccc                                                                                                                                                                                                      >  2:458629‑M1/63‑79 (MQ=255)                                                                                                                                                                       cagaagcattcgatgcaaccccggtatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGGACATCACAGGTCGGTGGGCTGCATACATCCggtg                                                                                                                                                        <  2:416716‑M1/63‑1 (MQ=255)                                                                                                                                                                          cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGt                             >  2:230193/1‑230 (MQ=255)                                                                                                                                                                            gggCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTCCATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAg                                                                                                                                                    >  2:243789/1‑109 (MQ=255)                                                                                                                                                                              attcgatgcaaccccggaatctgcaaagcctgcacccacgTCTTCGCGGGCATGCCCGcccccc                                                                                                                                                                                               <  2:37178‑M1/24‑2 (MQ=255)                                                                                                                                                                               ccAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTCGGTTCTTCGCGGGCATGCCCg                                                                                                                                                                                                     >  1:126679/1‑57 (MQ=255)                                                                                                                                                                                           gggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCa                                  >  1:167206/1‑208 (MQ=255)                                                                                                                                                                                                    cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCa  >  2:272699/1‑231 (MQ=255)                                                                                                                                                                                                                      |                                                                                                                                                                                                                     GGGCCAAGGCCAGCTTGTCGAAGCGTGGGGTGCTGGCCAGCAGGCTGTGGCTGTCGAGTACGGGGTAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCA  >  AE015451/3947700‑3948125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.