New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3947913 =	23 (0.890)	3 (0.140)	3/262	NT	15.0%	coding (136/1797 nt)	PP_3483	putative Type II secretion system protein
	?	AE015451	3947998 =	15 (0.710)					coding (51/1797 nt)	PP_3483	putative Type II secretion system protein

TCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACACCCAGCTTCCATCGTACAACTGCAGGGG  >  AE015451/3947825‑3948210                                                                                                                                                                              |                                                                                                                                                                                                                     tCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                                                                                                                      <  1:173798/222‑1 (MQ=255)                                             cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGt                                                                                                                  >  2:230193/1‑230 (MQ=255)                                                              gggggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCa                                                                                                                       >  1:167206/1‑208 (MQ=255)                                                                       cGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCa                                                                                       >  2:272699/1‑231 (MQ=255)                                                                                                   CATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc                                                                                                                            <  1:181555‑M1/166‑1 (MQ=255)                                                                                                          gctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgggg                                                                                                                   >  1:316085‑M2/69‑168 (MQ=255)                                                                                                          GCTCCGACAGGTACATCACGGGTCTGTGGGCTGCATTCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATg                                                                                                                                                                              >  1:207982‑M1/1‑109 (MQ=255)                                                                                                               caccggatgtatgcagcccaccgacctgtgatgtccctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATACCGGGGTTGCATCGAATGCTTCTg                                                                                                                                                                        <  2:416716‑M2/47‑1 (MQ=255)                                                                                                                acaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                                                                                                             <  2:316081‑M2/106‑1 (MQ=255)                                                                                                                       cATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc                                                                                                                <  2:167202/158‑1 (MQ=255)                                                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGcc                                  >  1:264921/1‑234 (MQ=255)                                                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgtc                                                                          >  2:124702/1‑185 (MQ=255)                                                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACAccc                           >  1:181213/1‑232 (MQ=255)                                                                                                                                  tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACACCCAGc                        >  1:4536/1‑235 (MQ=255)                                                                                                                                  ggtgGGTTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcg                                                                                                           <  1:416720/151‑1 (MQ=255)                                                                                                                                     gggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACACCCAGCTTc                     >  1:323869/1‑235 (MQ=255)                                                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGGGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAt                                                                                 >  1:65530/1‑173 (MQ=255)                                                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGGCGCAGGCTGGCCCg                                                                                                                           >  2:84213/1‑131 (MQ=255)                                                                                                                                       gCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCATGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCgtc                                   >  1:239367/1‑217 (MQ=255)                                                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCCGGCTGGCTCGGCCAg                                                                                                                      >  2:507832/1‑131 (MQ=255)                                                                                                                                                     gtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCggg                                                                                                             <  2:373657‑M2/106‑1 (MQ=255)                                                                                                                                                      tgggcgcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc                                                                                                                <  2:161421‑M2/103‑1 (MQ=255)                                                                                                                                                      ggggggcgggcatgcccgcgaagaCGTGGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt                                                                                                                                                                               <  2:37178‑M2/40‑1 (MQ=255)                                                                                                                                                        ggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACACCCAGCTTCCATCGTACAACTGCAgggg  >  1:250978‑M2/23‑235 (MQ=255)                                                                                                                                                             gggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt                                                                                                                                                         >  2:458629‑M2/18‑79 (MQ=255)                                                                                                                                                                 atgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCcaacca                             >  2:394480‑M2/14‑197 (MQ=255)                                                                                                                                                                              |                                                                                                                                                                                                                     TCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGGTGGCTTGGCGCCGTTACGGCGGCGGTCGGCCAACACCCAGCTTCCATCGTACAACTGCAGGGG  >  AE015451/3947825‑3948210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.