New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6029016	34 (1.320)	3 (0.130)	3/296	NT	10.1%	coding (445/1494 nt)	kauB	4‑guanidinobutyraldehyde dehydrogenase
	?	AE015451	= 6029199	22 (0.920)					coding (262/1494 nt)	kauB	4‑guanidinobutyraldehyde dehydrogenase

CATAGCCTGGCAGCACGTTCAGCACGCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAGCGGATCAGCTTGGCCTTGCGCTTGGCGGGGGCCAGCTGCGACCACA  >  AE015451/6028791‑6029240                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                 cATAGCCTGGCAGCACGTTCAGCACGCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATg                                                                                                                                                                                                                            >  1:374695/1‑232 (MQ=255)          gcagcaCGTTCAGCACGCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCa                                                                                                                                                                                                               <  1:353970/236‑1 (MQ=255)            agcaCGTTCAGCACGCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCa                                                                                                                                                                                                               >  1:354500/1‑234 (MQ=255)                     aGCACGCGAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCaa                                                                                                                                                                                                              <  1:413119/226‑1 (MQ=255)                          gCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGatccgcttcgccgacctgctgcgcaagaacgtcg                                                                                                                                                                                                >  1:199220‑M1/1‑201 (MQ=255)                               cGGGGATACCGGCCTCGATCGGCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCATCGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTg                                                                                                                                                                                             <  2:225370/233‑1 (MQ=255)                                       ccGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCtt                                                                                                                                                                                   >  1:239188/1‑235 (MQ=255)                                       ccGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCt                                                                                                                                                                                    >  1:497017/1‑234 (MQ=255)                                             tCGATCGCCAGTTGGGCGTTGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTg                                                                                                                                                                                             <  1:324708/219‑1 (MQ=255)                                                                    gATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCa                                                                                                                                                                                                               <  1:46206/178‑1 (MQ=255)                                                                    gATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAg                                                                                                                                                                        <  1:476243/217‑1 (MQ=255)                                                                             cAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGatccgcttcgccgacctgctgcgcaagaacgtcgaagagctggcgctgttggaaacgctggacatgggcaagccgatcggcgactc                                                                                                                                            >  1:19989‑M1/1‑150 (MQ=255)                                                                                cggcgATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCCGGGCCGAGTTTCCAGCAGGCCATCAGCCACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCa                                                                                                                                                                                                               <  1:110942/166‑1 (MQ=255)                                                                                                  cTTGAGCACGACCGCGTTACCGGTGGCCAGTGCAGGGCCGAGTGTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCAcc                                                                                                                                                    <  2:335601/207‑1 (MQ=255)                                                                                                     gAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCg                                                                                                                    <  1:162911/236‑1 (MQ=255)                                                                                                      aGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCg                                                                                                                                                                                 <  2:134015/174‑1 (MQ=255)                                                                                                            aCCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGatccgcttcgccgacctgctgcgcaagaacg                                                                                                                                                                                                   <  2:199216‑M1/150‑32 (MQ=255)                                                                                                               gAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGcc                                                                                                                                                         >  2:358629/1‑189 (MQ=255)                                                                                                                     ccGGGGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCGGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCtt                                                                                                                                                                                   <  2:421725/157‑1 (MQ=255)                                                                                                                          ggCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCgggg                                                                                                                                                                                                                       >  1:36633/1‑116 (MQ=255)                                                                                                                                     ggCCGAGTTTCCAGCAGGCCCTCAGCAACGGGAAGTTCCCCGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTg                                                                                                                                                             <  1:99170/163‑1 (MQ=255)                                                                                                                                        cGAGTTTCCCGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGCTGGCACCAACCACACCCACCGGTTCGCGGGTAACCAGGCCACGCTGGTCATGCg                                                                                                                                                                                                                          >  2:33782/1‑99 (MQ=38)                                                                                                                                        cGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAATCTGGTCATGAGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGTGTTTCCAACAGCGCCAg                                                                                  >  1:240020/1‑235 (MQ=255)                                                                                                                                            tttCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCaa                                                                                                                                                                                                              <  2:142021/107‑1 (MQ=255)                                                                                                                                             ttCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAg                                                                                                                                                                             >  2:150531/1‑139 (MQ=255)                                                                                                                                             ttCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGt                                                                                                                             >  1:88975/1‑187 (MQ=255)                                                                                                                                                         agcagcagCGGGAAGTTCCACGGCACGATGGCACCAACCACGCCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCa                                                                                                                                                                                                               <  2:42299/91‑1 (MQ=255)                                                                                                                                                                   ggAAGTTCCACGGCACGATGTCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCggggc                                                                                                                                                                                                                      >  2:86135/1‑75 (MQ=255)                                                                                                                                                                    gAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCg                                                      >  1:216394/1‑235 (MQ=255)                                                                                                                                                                       gTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATc                                                                                                                     >  1:5122/1‑169 (MQ=255)                                                                                                                                                                            aCGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAg                                                <  2:239184/233‑1 (MQ=255)                                                                                                                                                                                     tGGAACCAACCACACCCTCGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCtt                                                                             <  1:33784/195‑1 (MQ=255)                                                                                                                                                                                             accaCACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGct                                                                                >  2:351800/1‑184 (MQ=255)                                                                                                                                                                                                     cACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCg                                                                                                                    >  1:8080/1‑140 (MQ=255)                                                                                                                                                                                                      aCGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAGCGGATCAGCTTGGCCTTGCGCtt                         >  2:350048/1‑230 (MQ=255)                                                                                                                                                                                                               cgGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGCAGACCTCGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCg                                                                                                                                                        >  2:93074/1‑94 (MQ=255)                                                                                                                                                                                                                  gTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAGCGGATCAGCTTGGCCTTGCGCTTGGCGGGGGCCAGCTGCGa       <  1:358633/236‑1 (MQ=255)                                                                                                                                                                                                                            cAAGCTGatccgcttcgccgacctgctgcgcaagaacgtcgaagagctggcgctgttggaaacgctggacatgggcaagccgatcg                                                                                                                                                   >  2:59265‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                              aGCTGatccgcttcgccgacctgctgcgcaagaacgtcgaagagctggcgctgttggaaacgctggacatgggcaagccgatcggcgactcctccagcatcgacatcccaggtgcggcccaagccattcactggactgccgaagccatcgacaaggtctacgacga                                                                 <  1:466034‑M1/166‑162 (MQ=255)                                                                                                                                                                                                                                 tGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAGCGGATCAGCTTGGCCTTGCGCTTGGCGGGGGCCAGCTGCGACcaca  <  1:432758/226‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                 CATAGCCTGGCAGCACGTTCAGCACGCCAGCGGGGATACCGGCCTCGATCGCCAGTTGGGCGATGCGGATGGCGGTCAGCGGCGATTTTTCGGACGGCTTGAGCACGACCGAGTTACCGGTGGCCAGTGCAGGGCCGAGTTTCCAGCAGGCCATCAGCAACGGGAAGTTCCACGGCACGATGGCACCAACCACACCCACGGGTTCGCGGGTAACCAGGCCAAGCTGGTCATGCGGGGTCGGGGCAACTTCGTCGTAGACCTTGTCGATGGCTTCGGCAGTCCAGTGAATGGCTTGGGCCGCACCTGGGATGTCGATGCTGGAGGAGTCGCCGATCGGCTTGCCCATGTCCAGCGTTTCCAACAGCGCCAGCTCTTCGACGTTCTTGCGCAGCAGGTCGGCGAAGCGGATCAGCTTGGCCTTGCGCTTGGCGGGGGCCAGCTGCGACCACA  >  AE015451/6028791‑6029240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.