New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4158769	26 (1.010)	3 (0.120)	3/304	NT	11.8%	coding (779/1062 nt)	PP_3661	conserved membrane protein of unknown function, UPF0324 family
	?	AE015451	= 4158850	20 (0.810)					coding (860/1062 nt)	PP_3661	conserved membrane protein of unknown function, UPF0324 family

GTGGCGCAGGTGGTAGGCGCGGCCAGCAATGTCAGCCCCGAAGCCACGCATGTCGCCACCATCGTCAAGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAG  >  AE015451/4158621‑4159040                                                                                                                                                                                                                                      |                                                                                                                                                                                               gTGGCGCAGGTGGTAGGCGCGGCCAGCAATGTCAGCCCCGAAGCCACGCATGTCGCCACCATCGTCAAGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTgcctg                                                                                                                                                                                           <  1:463719‑M2/235‑6 (MQ=255)      gcAGGTGGTAGGCGCGGCCAGCAATGTCAGCCCCGAAGCCACGCATGTCGCCACCATCGTCAAGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGACCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTgcctgg                                                                                                                                                                                          <  2:497039‑M2/231‑7 (MQ=255)                                   gCCCCGAAGCCACGCATGTCGCCACCATCGTCAAGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCt                                                                                                                                                               <  2:429906/229‑1 (MQ=255)                                                                    aGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGaca                                                                                                                                                          <  1:464900/201‑1 (MQ=255)                                                                    aGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCa                                                                                                                                     <  2:147692/222‑1 (MQ=255)                                                                      aTGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGa                                                                                                                                                                                  <  2:321191/175‑1 (MQ=255)                                                                                                     tgctgGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGa                                                                                                                                                                                  >  2:278797/1‑144 (MQ=255)                                                                                                               gggCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACg                                                                                                                                >  1:372472/1‑184 (MQ=255)                                                                                                                  ccTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACggg                                                                            >  1:333266/1‑233 (MQ=255)                                                                                                                      tgGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCa                                                                                                                                     <  2:374889/172‑1 (MQ=255)                                                                                                                            aGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCg                                                                <  1:497043/235‑1 (MQ=255)                                                                                                                               cGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTg                                                             <  1:442155/235‑1 (MQ=255)                                                                                                                                gTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGc                                                            >  1:188272/1‑235 (MQ=255)                                                                                                                                                       cAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTgcctggcctgccttgcgcgaa                                                                                                                                                                           >  2:397270‑M2/1‑80 (MQ=255)                                                                                                                                                       cAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGtt                                      >  1:501186/1‑234 (MQ=255)                                                                                                                                                                                  tGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGt         >  1:273109/1‑236 (MQ=255)                                                                                                                                                                                       cGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTgcctggcctgccttgcgcgaacggctgatccacaggcccaccaccagcagtaccggcaccagcagcatgacccgggtcatcttgacgatggtggcgacatgcgtggcttcggggctgacattgctggccgcgcctaccacctgcgccacttcgtggacagtgccgcc                         <  1:176135‑M2/215‑168 (MQ=255)                                                                                                                                                                                          tttCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTgg                                    >  1:204008/1‑201 (MQ=255)                                                                                                                                                                                            tCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTgcctggcctgccttgcgcgaacggctgatccacaggcccaccaccagcagtaccggcaccagcagcatgacccgggtcatcttgacgatggtggcgacatgcgtggcttcggggctgacattgctggccgcgcctaccacctgcgccacttcgt                                      >  2:176131‑M2/1‑43 (MQ=255)                                                                                                                                                                                            tCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCGGTGGCTGGGTGGCgggggg                             >  2:321331/1‑206 (MQ=255)                                                                                                                                                                                                 ttCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTggg            >  2:467601/1‑218 (MQ=255)                                                                                                                                                                                                       gCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAg  <  1:482958/222‑1 (MQ=255)                                                                                                                                                                                                               cctggtGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCCTGGAGACCCGCTTCAGc                                                                                                     >  2:25708/1‑115 (MQ=255)                                                                                                                                                                                                                          cGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCggg                                <  1:209967/173‑1 (MQ=255)                                                                                                                                                                                                                           gATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGAc                                                                                                                                             >  2:36812/1‑63 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                               GTGGCGCAGGTGGTAGGCGCGGCCAGCAATGTCAGCCCCGAAGCCACGCATGTCGCCACCATCGTCAAGATGACCCGGGTCATGCTGCTGGTGCCGGTACTGCTGGTGGTGGGCCTGTGGATCAGCCGTTCGCGCAAGGCAGGCCAGGCGCAGGGCAACGGGCGCATTGCCATGCCCTGGTTCGCTTTCGGCTTCCTGGCCCTGGTCCTGGTGAATTCGATGCAAGTGCTGCCTGGCAGCGTGACCCAGGCCGTGAACAGCCTGGACACCTTTGCCTTGACCATGGCCATGACGGCGTTGGGCATGGAGACCCGCTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAG  >  AE015451/4158621‑4159040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.