New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 202317	68 (1.180)	4 (0.070)	3/326	NT	5.8%	coding (7823/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	= 208957	NA (NA)					coding (14463/26049 nt)	PP_0168	putative surface adhesion protein

GCAACAACGCTCAGGTCACCATCAAGGCCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/202077‑202317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaaggGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCGTTGTTGCTCAGGG  <  AE015451/208957‑208728                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCAACAACGCTCAGGTCACCATCAAGGCCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGGGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACC                                                                                                                                                                                                                                             >  1:170175/1‑236     CAACGCTCAGGTCACCATCAAGGCCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCG                                                                                                                                                                                                                                            <  2:945081/233‑1      acCGCTCAGGTCACCATCAAGGCCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAG                                                                                                                                                                                                                                         <  1:111743/233‑1                            CCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCA                                                                                                                                                                                                                                               <  1:1011711/207‑1                            CCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCA                                                                                                                                                                                                                                               >  2:1011708/1‑207                                                                                                     CCTGGGCATCACGTCCGCTGTGGATGTAGACAGTCACACCTTCGAGAACCTGCACCTGGGCGGCACCGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGGGTCGC                                                                                                                                                                                                                                  <  1:133125/147‑1                                                                                                                            ATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGGCACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAG                                                                                                                                                                                                                                         >  2:836977/1‑117                                                                                                                                                                                                                            CGACCCCTTCGGTTACCGAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCCGTGGCGGCCACCGCCGAGTTGATGCCCAGGCGGAT                                                                                                       >  2:164717/1‑151                                                                                                                                                                                                                            CGACCCCTTCGGTTACCGAAGGGGTCGCGGGCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTGCACCGCCG                                                                                                                          >  1:782763/1‑132                                                                                                                                                                                                                                  CTTCGGTCACCGAAGGGGTGGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGAACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGC                                                                                                  <  2:704453/150‑1                                                                                                                                                                                                                                      ggatACCGAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCA                                                                  <  2:548577/174‑1                                                                                                                                                                                                                                          ACCGAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGCCATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCGTTGTTGCTCAG    <  1:748744/236‑1                                                                                                                                                                                                                                          ACCGAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCGTTGTTGCTCAG    <  1:557116/236‑1                                                                                                                                                                                                                                           CCGAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGCCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCG               <  1:593267/224‑1                                                                                                                                                                                                                                             gacGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCGCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCTCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGg                         <  1:756167/209‑2                                                                                                                                                                                                                                             GAAGGGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCGTTGTTGCTCAGGG  >  1:645069/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCAACAACGCTCAGGTCACCATCAAGGCCGGTGAGACCAGTGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTACCAGGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCACACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/202077‑202317 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaaggGGTCGCGGTCAGCTTGGCCACCACTTCGTCGGTGGTGTCGGTGACATCCACCTTCGCGGCACCGCCCAGCTCGAGGTTCTCGAAGGTCGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCATCGTTGTAGACGTCATCGCCCTGCGCAGCGTGGGTGTACGGCGCGCTGGTTTCGCCGGCCTTGATGGTGACCTGGGCGTTGTTGCTCAGGG  <  AE015451/208957‑208728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.