New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 608871 = | 78 (1.350) | 4 (0.070) | 4/328 | NT | 5.3% | coding (742/813 nt) | PP_0524 | putative Periplasmic cobalamin‑binding protein HutB |
? | AE015451 | 608902 = | 68 (1.230) | coding (773/813 nt) | PP_0524 | putative Periplasmic cobalamin‑binding protein HutB |
AGGCTACGGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/609109‑608871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctTGTGTGCGTTGCTGGACGCTAAAGCGCCGGTGTCCAGGTGATGCT > AE015451/608902‑608946 AGGCTACGGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCC > 1:167108/1‑236 AGGCTACGGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCC > 2:641369/1‑236 AGGCTACGGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCC > 1:690812/1‑235 GGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCTTG < 1:415892/234‑1 GCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGAGCATCTGCCCG > 1:1082241/1‑220 AAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCTTGTGTGCGTTGCTGGACGCTAAAG < 1:691150/236‑1 CTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGC > 1:419142/1‑173 CTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCGGCCCG > 1:819234/1‑176 GACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCTTGTGTGCGTTGCTGGACGCTAAAGCGCCGGTGTCCAGGTGATGCT < 1:1047572/160‑1 GACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCTTGTGTGCGTTGCTGGACGCTAAAGCGCCGGTGTCCAGGTGATGCT > 2:1047569/1‑160 CTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCGCCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCTTGTGTGCGTTGCTGGACGCTAAAGCGCCGGTGTCC < 1:258373/142‑1 AGGCTACGGCATCGTGGGCCTGCGCGGAAGCTGGGTAGCAAGCCGCGAGCTTACGCTCGACCTGAAGCTGGACAACCTGCTGGGAAAGCAGTACAGCCGCGTCCACTACAACCACCAGGGCAACGACTACGGCTATCGCGAAGAAAGACGCACTTGGCTCTTGAGCATCACCTGGACACCGGCGCTTTAGCGTCCAGCAACGCACACAAGCGGGCGGTGGCTTCGATCATCTGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/609109‑608871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctTGTGTGCGTTGCTGGACGCTAAAGCGCCGGTGTCCAGGTGATGCT > AE015451/608902‑608946 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |