New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	665413 =	64 (1.110)	4 (0.070)	4/328	NT	6.1%	coding (2279/4902 nt)	yfhM	lipoprotein of unknown function
	?	AE015451	665429 =	62 (1.120)					coding (2295/4902 nt)	yfhM	lipoprotein of unknown function

GCTTGCGCTCGGCGCGGTCCAGCGGCAGGTGCAGCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGCGGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665649‑665413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcggCTACCTGATGATCGAGTCCAGCGATGGCCC  >  AE015451/665429‑665458                                                                                                                                                                                                                                                                             GCTTGCGCTCGGCGCGGTCCAGCGGCAGGTGCAGCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGCGGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGC                                  <  1:541881/235‑1                                                      GGCGTGGCATTGGCCTTGCGCTCACCAGGGCGGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGCTACCTGATG                      <  2:568032/194‑1                                                                                                                             GGCGTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGAGCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGCTACCTGATGATCGAGTCCAG           <  2:46990/134‑1                                                                                                                                            CACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCC  <  1:385833/128‑1                                                                                                                                            CACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGGCTACCTGATGATCGAGTCCAGCGATGGCCC  >  2:385830/1‑128                                                                                                                                                                                                                                                                             GCTTGCGCTCGGCGCGGTCCAGCGGCAGGTGCAGCACGCCCACGGCGCGCTTGGGCGTGGCATTGGCCTTGCGCTCACCAGGGCGGATAACCAACGCGCTGATGTACAGGTCGTGACGGGCCCAGGCCTTGTCCAGTTGCACGTCAAAGGTCTTGCCCTCGGCGGGCACATCGATCTCCTGCCACCACAGCGGGCCATCGCTGGACTCGATCATCAGGTAGCCGCTGCCCGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665649‑665413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcggCTACCTGATGATCGAGTCCAGCGATGGCCC  >  AE015451/665429‑665458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.