New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	665680 =	60 (1.040)	3 (0.060)	3/322	NT	5.1%	coding (2546/4902 nt)	yfhM	lipoprotein of unknown function
	?	AE015451	665839 =	55 (1.010)					coding (2705/4902 nt)	yfhM	lipoprotein of unknown function

CGCCAGGCTGGCCAGGCGGCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665915‑665680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgggcgcaAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCA  >  AE015451/665839‑665986                                                                                                                                                                                                                                                                                                                                                                                                  atcgAGGCTGGCCAGGCGGCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTTTCAACGGCTGTTTCGGGCGCA                                                                                                                                                      >  1:683035/5‑236                                                                     CATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCCCTGTCAACGGCTGTTT                                                                                                                                                              >  2:153248/1‑160                                                                                                                                                                                        GCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAAC                            >  1:561904/1‑175                                                                                                                                                                                        GCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAAC                            <  2:561901/175‑1                                                                                                                                                                                                  TTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCAAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTCACCATAGTCGCCCAGCA  >  2:42748/1‑191                                                                                                                                                                                                                                                                                                                                                                                                  CGCCAGGCTGGCCAGGCGGCCTTGGCCGGCCTCGATCAACTGGCCGTAGATGTCCAGTTGATCGGCACCATAGGCCTTGCGCCCGAACAGGCTGGCGAACGGGTCGGGGGTTTTGAAATCGGTGATGTTGAGGATGCCCACGTCCACCGCCGACAACAACACATGCACCTGCTTGGGCACACTGCCATCGGCGTTGGCGGCCTTTACCTTCACTGTCAACGGCTGTTTCGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/665915‑665680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgggcgcaAGGCCTATGGTGCCGATCAACTGGACATCTACGGCCAGTTGATCGAGGCCGGCCAAGGCCGCCTGGCCAGCCTGGCGTTCGGTGGCGATGCGGCGATGGCCAAGGGGGGCAAGCGACCCAACACTACGGTAACCATAGTCGCCCAGCA  >  AE015451/665839‑665986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.