New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	811732 =	59 (1.020)	5 (0.090)	5/322	NT	8.3%	coding (520/918 nt)	PP_0698	Transcriptional regulator, LysR family
	?	AE015451	811872 =	55 (1.010)					coding (380/918 nt)	PP_0698	Transcriptional regulator, LysR family

GCTGGTGCTGTCTTGCGAACCGACCATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/811973‑811732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcctgcgGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACCGGCGGGGGTGAGGAAAATGGCCCGGTTGCGGCGTTCGA  >  AE015451/811872‑812100                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGGTGCTGTCTTGCGAACCGACCATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                                                                                                                                                                              <  1:686633/235‑1         TGTCTTGCGAACCGACCATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGC                                                                                                                                                                                                                                        <  2:586604/233‑1             TTGCGAACCGACCATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTG                                                                                                                                                                                                                                         >  2:989462/1‑228                          ATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCG                                                                                                                                                                                                                                             >  1:56756/1‑211                                                          GCGCTTCCAGGCCACCCACCCCGACCTTCAGTTGCCCCGGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCT                                                                                                                                                                                                                                          <  1:791274/182‑1                                                                                                      CCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAACCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGT                                                                                                                                                                                                       <  1:938257/173‑1                                                                                                                         CTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGCCTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                                                                                                                                                                              <  2:140444/115‑1                                                                                                                              CGCGCAGCTGTGGCGCCCTGGCAATGCGCCGCGACGACTTCCACTGGGCCAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAAC                                                                                                                                                                                                                        <  2:178134/132‑1                                                                                                                                CGCAGCGGTGTCGACCTGGCAATTCGCCACGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                                                                                                                                                                              <  2:884260/108‑1                                                                                                                                                    AATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCT                                                                                                  >  2:1046616/1‑228                                                                                                                                                           CGCGACGACTTCCACGGGGAAAACCAGCTGTACAGCCAGAAAATCTGCGATGCATGGATCGGCCCGGTGGGCCACCCCGCCGCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGC                                                                                                                                                                    <  1:739230/155‑1                                                                                                                                                                     TCCACTGGGACAACCAGCTGTACAGCCCGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCC                                                                                                                                                                                                                                              <  1:219747/71‑1                                                                                                                                                                                             GCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCGGCTACCAG                                                                                                                                                                                                                               <  2:3022/62‑1                                                                                                                                                                                                                                            GCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACCGGCGGGGGTGAGGAAAATGGCCCGGTTGCGGCGTTCGc  >  2:758978/1‑235                                                                                                                                                                                                                                            GCCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGC                                                                                                                                                                                          >  2:511702/1‑52                                                                                                                                                                                                                                             CCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTT                                                                                      <  2:306004/151‑1                                                                                                                                                                                                                                             CCTGCGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGT                                                                                                                          <  2:257476/115‑1                                                                                                                                                                                                                                             CCTGCGGCTACCAGGGGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCG                                                                           <  1:869410/162‑1                                                                                                                                                                                                                                              CTGCGGCTACCAGGTGCAACGGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAA                                                                                                                                             <  1:172555/95‑1                                                                                                                                                                                                                                                 CGGCTCCCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGG                                                               <  2:714964/170‑1                                                                                                                                                                                                                                                 CGGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGAT                                                                      <  2:50101/163‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGGTGCTGTCTTGCGAACCGACCATCGCCATGCGCTGGCTGATCCCGCGCCTGCCGCGCTTCCATGCCACCCACCCCGACCTTCAGTTGCACCTGGTAGCCGCAGGCGGCCCGCTGGACTTCGCGCGCAGCGGTGTCGACCTGGCAATTCGCCGCGACGACTTCCACTGGGACAACCAGCTGTACAGCCAGAAAATCTGCGATGAATGGATCGGCCCGGTGTGCCACCCCGCCGCCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/811973‑811732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcctgcgGCTACCAGGTGCAACTGAAGGTCGGGGTGGGTGGCATGGAAGCGCGGCAGGCGCGGGATCAGCCAGCGCATGGCGATGGTCGGTTCGCAAGACAGCACCAGCACATTGTCGCGAGCTTGTTGCTGCAGGCGCTGCACGGCGCCTTCGAGCTGTTCGAAGATCGCCTGGGTGGTGCCTTGCAGGGCACGACCGGCGGGGGTGAGGAAAATGGCCCGGTTGCGGCGTTCGA  >  AE015451/811872‑812100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.