| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1030530 = | 59 (1.020) | 4 (0.070) | 4/322 | NT | 6.5% | coding (588/1353 nt) | PP_0887 | Sensor histidine kinase |
| ? | AE015451 | 1030592 = | 60 (1.110) | coding (650/1353 nt) | PP_0887 | Sensor histidine kinase | |||||
AGGATTTGCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1030772‑1030530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccaggAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGCAAATCCTCCAGGACCAGGTAAAGCTGTGCAAAGAGACTTTGCAACAGCTGGT > AE015451/1030592‑1030817 AGGATTTGCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGC < 1:507453/236‑1AGGATTTGCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGC < 1:702704/236‑1 GGATTTGCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGC < 2:500753/235‑1 GCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCCCGGCAAAAAAGGTGATCACAGCCGCCGCCAGG > 1:724595/1‑236 GTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCAGGCGCGCGGCAAAAAAGGTGATCACAGCCG > 1:235670/1‑206 acGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGC < 2:1025569/165‑1 GCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCACGCAGGCTTTCTTCACGCTGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAG < 2:586248/163‑1 cTCACGCCGCTCGGAACGCAGCTGCGCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCC < 2:116742/81‑1 tcgCGCCGCTCTGACCGCAGCTGCGCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGA < 2:656194/127‑1 gatCTGCTGCTGGCGGCGCAGCTCTTCGGCCATGGGCGCGGCAAAAAAGGTGATCACGGCCGCCGCCAGGAGCAGCTGCGTGCAGTGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTAC < 2:459074/131‑1 gTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGC < 2:705738/219‑1 CGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGGAGCAGCTGCGTTC < 1:371247/49‑1 CGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCC > 1:672154/1‑93 CGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCC < 2:672151/93‑1 CCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGCAAATCCTCCAGGACCAGGTAAAGCTGTGCAAAGAGACTTTGCAACAGCTGGT > 2:884361/1‑234 CCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACG > 2:280916/1‑137 CCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACG < 1:280919/137‑1 CGCCAGTAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGCAAATCCTCCAGGACCAGGTAAAGCTGTG < 1:472509/209‑1 CCAGGAGCAGCTGGCTTCAGAGGGGCGTGAAGACGGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGG < 2:924312/98‑1 GGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGAGGGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCCGTTGCAGGCGGAC > 1:155038/1‑172 GGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGA > 2:95563/1‑110 AGGATTTGCAGGTCCTCCTGCAACAGCGGGTCGGTGTGGTCCTGGCGCATTTCGTTGATCAGCACGCTCATGGTCGCCAGCGGCGTACCCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1030772‑1030530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccaggAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGCAAATCCTCCAGGACCAGGTAAAGCTGTGCAAAGAGACTTTGCAACAGCTGGT > AE015451/1030592‑1030817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |