New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1030530 =	59 (1.020)	4 (0.070)	4/322	NT	6.5%	coding (588/1353 nt)	PP_0887	Sensor histidine kinase
	?	AE015451	1030592 =	60 (1.110)					coding (650/1353 nt)	PP_0887	Sensor histidine kinase

TGCTGATCCACAGTGCCTTGCTGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGC  >  AE015451/1030295‑1030765                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            tgctgATCCACAGTGCCTTGCTGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGcc                                                                                                                                                                                                                                             >  1:1082041/1‑236 (MQ=255)          accagctgttgcaaagtctctttgcacagctttacctggtcctggaggatttgcaggtcctcctgcaacagcgggtcggtgtggtcctggcgcatttcgttgatcagcacgctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTggcgg                                                                                                                                                                                                                                      >  2:884361‑M1/227‑234 (MQ=255)                   tGCTGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGAt                                                                                                                                                                                                                            >  1:624175/1‑235 (MQ=255)                    gCTGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGAt                                                                                                                                                                                                                            <  2:602709/234‑1 (MQ=255)                      tGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCAc                                                                                                                                                                                                                         >  1:924526/1‑235 (MQ=255)                           tACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCtt                                                                                                                                                                                                                      >  2:776200/1‑233 (MQ=255)                             cTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCtttt                                                                                                                                                                                                                    >  1:898272/1‑233 (MQ=255)                                  gcggcTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTggc                                                                                                                                                                                                                                        >  1:803072/1‑208 (MQ=255)                                  cacagctttacctggtcctggaggatttgcaggtcctcctgcaacagcgggtcggtgtggtcctggcgcatttcgttgatcagcacgctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctACTggcg                                                                                                                                                                                                                                       <  1:472509‑M1/7‑1 (MQ=255)                                     gcTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCggtg                                                                                                                                                                                                                              >  2:401314/1‑215 (MQ=255)                                     gcTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCcgcgc                                                                                                                                                                                                           >  2:543771/1‑234 (MQ=255)                                                 cGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGGTCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAaga                                                                                                                                                                                              >  1:1030885/1‑235 (MQ=255)                                                        gtCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCtgtg                                                                                                                                                                                                                              <  2:802754/196‑1 (MQ=255)                                                              ttACCTGGTGCCGCTGGCGTTCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCcgcgcg                                                                                                                                                                                                          <  1:90610/210‑1 (MQ=255)                                                              gcaggtcctcctgcaacagcgggtcggtgtggtcctggcgcatttcgttgatcagcacgctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCgac                                                                                                                                                                                                <  2:705738‑M1/46‑2 (MQ=255)                                                                  gtccgcctgcaacggcgggtcggtgtggtcctggcgcatttcgttgatcagccctctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctcc                                                                                                                                                                                                                                            >  1:155038‑M1/171‑172 (MQ=255)                                                                         cGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCt                                                                                                                                                                         >  2:660645/1‑232 (MQ=255)                                                                         cGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGc                                                                                                                                                                       >  1:788358/1‑234 (MQ=255)                                                                              gCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAg                                                                                                                                                                                 >  1:883950/1‑219 (MQ=255)                                                                              gCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCaga                                                                                                                                                                >  1:946273/1‑236 (MQ=255)                                                                                     cTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGagca                                                                                                                                                                            <  1:157271/217‑1 (MQ=255)                                                                                             aCCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAgggcaat                                                                                                                                                                           <  2:867369/210‑6 (MQ=255)                                                                                                     gTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAgg                                                                                                                                                                                >  1:1004361/1‑197 (MQ=255)                                                                                                          tGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCa                                                                                                                                                                                  >  1:206227/1‑190 (MQ=255)                                                                                                          tGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCCGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGcgacg                                                                                                                                      <  1:490912/234‑1 (MQ=255)                                                                                                           gTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAg                                                                                                                                    >  1:649615/1‑235 (MQ=255)                                                                                                           cgttgatcagcacgctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTggcgg                                                                                                                                                                                                                                      >  2:280916‑M1/130‑137 (MQ=255)                                                                                                           cgttgatcagcacgctcatggtcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTggcgg                                                                                                                                                                                                                                      <  1:280919‑M1/8‑1 (MQ=255)                                                                                                                     aTCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGcgacga                                                                                                                                     >  1:130278/1‑224 (MQ=255)                                                                                                                              ggCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTAc                                                                                                                >  1:616876/1‑236 (MQ=255)                                                                                                                                tcgccagcggcgtacccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctcc                                                                                                                                                                                                                                            >  2:95563‑M1/109‑110 (MQ=255)                                                                                                                                cATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTAcc                                                                                                               >  1:747227/1‑235 (MQ=255)                                                                                                                                   tGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAg                                                                                                            >  1:756823/1‑235 (MQ=255)                                                                                                                                        tGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTGCCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTgcg                                                                                                                                           <  1:200531/199‑1 (MQ=255)                                                                                                                                             gCCTCCAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGcgcc                                                                                                                                                                                      <  1:299542/151‑1 (MQ=255)                                                                                                                                               ccagttcatgggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggccgtcttcacgcccctctgaagccagctgctCCTgg                                                                                                                                                                                                                                         <  2:924312‑M1/5‑1 (MQ=255)                                                                                                                                               cTACAGCTTGCTGCTGGTGCAGTTCTCCCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTgccg                                                                                               <  1:30121/236‑1 (MQ=255)                                                                                                                                                       tgctgcTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCAt                                                                                          <  1:431726/233‑1 (MQ=255)                                                                                                                                                         ggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTggcggcg                                                                                                                                                                                                                                    <  2:672151‑M1/10‑1 (MQ=255)                                                                                                                                                         ggcggcaccggcggcctgggtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTggcggcg                                                                                                                                                                                                                                    >  1:672154‑M1/84‑93 (MQ=255)                                                                                                                                                           gctgGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGcga                                                                                                                                        >  2:950109/1‑183 (MQ=255)                                                                                                                                                              ggTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGt                                                                                 <  1:823149/235‑1 (MQ=255)                                                                                                                                                                      tCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTgcc                                                                                                <  1:227426/212‑1 (MQ=255)                                                                                                                                                                       cTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACC‑TTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAgcg                                                                                                                                                             >  2:566427/1‑149 (MQ=255)                                                                                                                                                                       cTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACC‑TTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAgcg                                                                                                                                                             <  1:566430/149‑1 (MQ=255)                                                                                                                                                                        gaCCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGt                                                                                 <  1:253061/224‑1 (MQ=255)                                                                                                                                                                         aCCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCCGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGCAGAGCTGCGCCGCCAGGa                                                                                                                                                                               <  2:594713/130‑1 (MQ=255)                                                                                                                                                                            gtagccacagccagcagttgctcgtcgcgcaggctttcttcacgccgcactgcacgcagctgctCCTGGCGGCGGCCGTGATCACCTTTTTTGCCGCGCCCATGGCCGAAGAGCTGCGCcgccagcagcagatc                                                                                                                                                                        <  2:459074‑M1/70‑4 (MQ=255)                                                                                                                                                                            cGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCgg                                                                                                    <  1:776203/202‑1 (MQ=255)                                                                                                                                                                                  aaGGGCTGCTGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGc                                                            <  1:428389/236‑1 (MQ=255)                                                                                                                                                                                  aaGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTAcc                                                                                                               >  1:337434/1‑185 (MQ=255)                                                                                                                                                                                       cTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTgctggccg                                                                                                                       >  1:173046/1‑170 (MQ=255)                                                                                                                                                                                           cgctGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTGGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAgcg                                                                                                                                                             <  2:445181/127‑1 (MQ=255)                                                                                                                                                                                              tGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCtgtg                                                                                                                                                                                                                              <  2:755547/62‑1 (MQ=255)                                                                                                                                                                                                 tcgtcgcgcaggctttcttcacgccgctctgaacgcagctgctCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGCGCAGCTGCGGTCagagcggcgcga                                                                                                                                                       <  2:656194‑M1/87‑4 (MQ=255)                                                                                                                                                                                                     ggACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACC‑TTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATg                                          <  2:1082038/234‑1 (MQ=255)                                                                                                                                                                                                                     tACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCg                          <  1:408378/235‑1 (MQ=255)                                                                                                                                                                                                                      aCGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGa                         <  1:355810/235‑1 (MQ=255)                                                                                                                                                                                                                      aCGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGAc                        <  1:1078977/236‑1 (MQ=255)                                                                                                                                                                                                                       cGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGAc                        <  1:280265/235‑1 (MQ=255)                                                                                                                                                                                                                        ggCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCGGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCAGCGCGACGAGCAACTgctggca                                                                                                                        >  2:376370/1‑137 (MQ=255)                                                                                                                                                                                                                        ggCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATg                                          >  1:943458/1‑216 (MQ=255)                                                                                                                                                                                                                         gCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGAt                                                    <  2:676775/205‑1 (MQ=255)                                                                                                                                                                                                                          cATGTGGCTGGGCATTGCCCTGGCGGCGGCGGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTAcc                                                                                                               <  2:313765/145‑1 (MQ=255)                                                                                                                                                                                                                          cATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCAtt                                                                                         >  2:990360/1‑166 (MQ=255)                                                                                                                                                                                                                            tgtgGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCGGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAActgct                                                                                                                            <  2:730048/130‑1 (MQ=255)                                                                                                                                                                                                                             gtgGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACg                                               <  1:372195/206‑1 (MQ=255)                                                                                                                                                                                                                               ggCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCg                                                           >  2:427112/1‑192 (MQ=255)                                                                                                                                                                                                                               ggCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTg               >  1:382882/1‑236 (MQ=255)                                                                                                                                                                                                                               ggCTGAGCATTGCCCTGGCGCCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAgg                                                                                                                                                                                <  2:101007/75‑1 (MQ=255)                                                                                                                                                                                                                               gaacgcagctgctCCTGGCGGCGGCTGTGATCACCTTTTTTGCcgcgcg                                                                                                                                                                                                          <  1:371247‑M1/36‑1 (MQ=255)                                                                                                                                                                                                                                gCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGc                                                        >  1:1005618/1‑194 (MQ=255)                                                                                                                                                                                                                                gCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGGGGc                                                                                                                   >  1:282916/1‑135 (MQ=255)                                                                                                                                                                                                                                       aTTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATg                                          >  2:903785/1‑201 (MQ=255)                                                                                                                                                                                                                                       aTTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGAccc                      >  1:450329/1‑221 (MQ=255)                                                                                                                                                                                                                                       aTTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTCCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCaggagg        >  1:576816/1‑235 (MQ=255)                                                                                                                                                                                                                                            CCTGGCGGCGGCTGTGATCACCTTTTTTGCCGGGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGc  >  1:724595‑M1/1‑236 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            TGCTGATCCACAGTGCCTTGCTGTATTACTCCGGCGGCTCGACCAACCCGTTCGTGTCGTATTACCTGGTGCCGCTGGCGATCGCTGCGGTGACCTTGCCGTGGCTGTATTCGCTGATCCTGTCGGGCATTGCGCTGACGGCCTACAGCTTGCTGCTGGTGCAGTTCTACCCGCTCGAAGGGCTGCCGATGGCGCGGGACAAGATGCAGGTCTACGGCATGTGGCTGAGCATTGCCCTGGCGGCGGCTGTGATCACCTTTTTTGCCGCGCGCATGGCCGAAGAGCTGCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACACCGACCCGCTGTTGCAGGAGGACCTGC  >  AE015451/1030295‑1030765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.